From 70ab7827d46edfb0172a5d7b9066ad96aef07050 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Fri, 20 Jan 2023 13:00:30 +0100 Subject: [PATCH 1/2] Activate auto-work clean up on successful completion for full-tests --- nf_core/pipeline-template/conf/test_full.config | 2 ++ 1 file changed, 2 insertions(+) diff --git a/nf_core/pipeline-template/conf/test_full.config b/nf_core/pipeline-template/conf/test_full.config index d92692fa94..46b165a910 100644 --- a/nf_core/pipeline-template/conf/test_full.config +++ b/nf_core/pipeline-template/conf/test_full.config @@ -10,6 +10,8 @@ ---------------------------------------------------------------------------------------- */ +cleanup = true + params { config_profile_name = 'Full test profile' config_profile_description = 'Full test dataset to check pipeline function' From 67c8aa9d36493fef7b9b1e6075cf50dee4ab7c95 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Fri, 20 Jan 2023 13:02:34 +0100 Subject: [PATCH 2/2] Update CHANGELOG.md --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index be6d5820d7..856bc9a604 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,8 @@ ### Template +- Turn on automatic clean up of intermediate files in `work/` on successful pipeline completion in full-test config ([#2163](https://github.com/nf-core/tools/pull/2163)) + ### Linting ### Modules