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Replace samtools/bam2fq with samtools/fastq #257

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sofstam opened this issue Mar 7, 2023 · 1 comment · Fixed by #274
Closed

Replace samtools/bam2fq with samtools/fastq #257

sofstam opened this issue Mar 7, 2023 · 1 comment · Fixed by #274
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enhancement Improvement for existing functionality
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1.1.0 - Augmented...

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sofstam commented Mar 7, 2023

Description of feature

Samtools/bam2fq has been deprecated. We need to replace it with samtools/collatefastq.
@sofstam sofstam added the enhancement Improvement for existing functionality label Mar 7, 2023
@sofstam sofstam added this to the 1.1.0 - Augmented Akita milestone Mar 7, 2023
@sofstam sofstam self-assigned this Mar 7, 2023
@sofstam sofstam changed the title Replace samtools/bam2fq with samtools/collatefastq Replace samtools/bam2fq with samtools/fastq Mar 23, 2023
@sofstam sofstam mentioned this issue Mar 23, 2023
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@jfy133 jfy133 linked a pull request Apr 15, 2023 that will close this issue
Subsitute samtools/bam2fq with samtools/fastq #274
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sofstam commented Apr 18, 2023

Close as completed #274

@sofstam sofstam closed this as completed Apr 18, 2023
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enhancement Improvement for existing functionality
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Subsitute samtools/bam2fq with samtools/fastq sofstam/taxprofiler
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