From 29dae29d57d8e6c010d582c48e9b8ae163f86a98 Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Thu, 27 May 2021 09:10:12 +0200 Subject: [PATCH 1/2] fix: cf_ploidy type parameter --- nextflow_schema.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow_schema.json b/nextflow_schema.json index 2808abc78b..4e4acc1ccd 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -295,7 +295,7 @@ "description": "Design known contamination value for Control-FREEC" }, "cf_ploidy": { - "type": "string", + "type": "number", "default": "2", "fa_icon": "fas fa-wrench", "description": "Overwrite Control-FREEC ploidy" From 8951221373a29f95aae3accfbef96c30acc6e30c Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Thu, 27 May 2021 09:14:19 +0200 Subject: [PATCH 2/2] fix: cf_ploidy type --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index bd17146067..d92c6929f5 100644 --- a/nextflow.config +++ b/nextflow.config @@ -52,7 +52,7 @@ params { cf_coeff = 0.05 // default value for Control-FREEC cf_contamination = null // by default not specified in Control-FREEC cf_contamination_adjustment = null // by default we are not using this in Control-FREEC - cf_ploidy = "2" // you can use 2,3,4 + cf_ploidy = 2 // you can use 2,3,4 cf_window = null // by default we are not using this in Control-FREEC generate_gvcf = null // g.vcf are not produced by HaplotypeCaller by default no_strelka_bp = null // Strelka will use Manta candidateSmallIndels if available