diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml index 558317b146..269ede0e4c 100644 --- a/.github/workflows/awsfulltest.yml +++ b/.github/workflows/awsfulltest.yml @@ -20,10 +20,10 @@ jobs: workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} - workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/sarek/work-${{ github.sha }}/germline_test + workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/sarek/work-${{ github.sha }}/somatic_test parameters: | { - "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/sarek/results-${{ github.sha }}/germline_test" + "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/sarek/results-${{ github.sha }}/somatic_test" } profiles: test_full,aws_tower - uses: actions/upload-artifact@v3 diff --git a/.github/workflows/awsfulltest_somatic.yml b/.github/workflows/awsfulltest_germline.yml similarity index 92% rename from .github/workflows/awsfulltest_somatic.yml rename to .github/workflows/awsfulltest_germline.yml index 367dee4870..d8bc5860bd 100644 --- a/.github/workflows/awsfulltest_somatic.yml +++ b/.github/workflows/awsfulltest_germline.yml @@ -20,9 +20,9 @@ jobs: workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} - workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/sarek/work-${{ github.sha }}/somatic_test + workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/sarek/work-${{ github.sha }}/germline_test parameters: | { - "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/sarek/results-${{ github.sha }}/somatic_test" + "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/sarek/results-${{ github.sha }}/germline_test" } profiles: test_full_somatic,aws_tower diff --git a/CHANGELOG.md b/CHANGELOG.md index 124127f0d0..01e4572645 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -24,6 +24,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#768](https://github.com/nf-core/sarek/pull/768) - Use double quotes to fix import of singularity images for deepvariant module - [#770](https://github.com/nf-core/sarek/pull/770) - Use double quotes to fix import of singularity images for gatk4/cnnscorevariants module - [#771](https://github.com/nf-core/sarek/pull/771) - update to new modules syntax +- [#777](https://github.com/nf-core/sarek/pull/777) - Fix mixed up aws full size tests output paths ### Deprecated