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Important! Template update for nf-core/tools v2.12 #163

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merged 10 commits into from
Jan 30, 2024

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Version 2.12 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.12 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.12 release page.

@subwaystation
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I was just in the middle of resolving the previous one @mashehu :P

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github-actions bot commented Jan 29, 2024

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 564c039

+| ✅ 187 tests passed       |+
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in WorkflowPangenome.groovy: Optionally add in-text citation tools to this list.

✅ Tests passed:

Run details

  • nf-core/tools version 2.12
  • Run at 2024-01-29 15:59:12

@subwaystation
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[heumos@savasana pangenome]$ prettier -c .
Checking formatting...
All matched files use Prettier code style!

I can't make it prettier. Any ideas @FriederikeHanssen ?

@subwaystation subwaystation merged commit 79ea215 into dev Jan 30, 2024
15 checks passed
@heuermh heuermh deleted the nf-core-template-merge-2.12 branch February 22, 2024 16:14
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3 participants