From 38b16706fa3a9d4ee2bf46fa5805e7397e275cdd Mon Sep 17 00:00:00 2001 From: Phil Ewels Date: Tue, 2 May 2023 15:52:06 +0200 Subject: [PATCH] Use long form docker.io address for Ubuntu (#3358) --- modules/nf-core/cat/fastq/main.nf | 2 +- modules/nf-core/custom/tabulartogseacls/main.nf | 2 +- modules/nf-core/custom/tabulartogseagct/main.nf | 2 +- modules/nf-core/gnu/sort/main.nf | 2 +- modules/nf-core/gunzip/main.nf | 2 +- modules/nf-core/igv/js/main.nf | 2 +- modules/nf-core/md5sum/main.nf | 2 +- modules/nf-core/shasum/main.nf | 2 +- modules/nf-core/untar/main.nf | 2 +- modules/nf-core/untarfiles/main.nf | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/modules/nf-core/cat/fastq/main.nf b/modules/nf-core/cat/fastq/main.nf index 4bdec89001f..c5359bf93f5 100644 --- a/modules/nf-core/cat/fastq/main.nf +++ b/modules/nf-core/cat/fastq/main.nf @@ -5,7 +5,7 @@ process CAT_FASTQ { conda "conda-forge::sed=4.7" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(reads, stageAs: "input*/*") diff --git a/modules/nf-core/custom/tabulartogseacls/main.nf b/modules/nf-core/custom/tabulartogseacls/main.nf index 0e1d4d9638a..c117d3c6412 100644 --- a/modules/nf-core/custom/tabulartogseacls/main.nf +++ b/modules/nf-core/custom/tabulartogseacls/main.nf @@ -5,7 +5,7 @@ process CUSTOM_TABULARTOGSEACLS { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(samples) diff --git a/modules/nf-core/custom/tabulartogseagct/main.nf b/modules/nf-core/custom/tabulartogseagct/main.nf index 62ca8eaf84a..c06816620e2 100644 --- a/modules/nf-core/custom/tabulartogseagct/main.nf +++ b/modules/nf-core/custom/tabulartogseagct/main.nf @@ -5,7 +5,7 @@ process CUSTOM_TABULARTOGSEAGCT { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(tabular) diff --git a/modules/nf-core/gnu/sort/main.nf b/modules/nf-core/gnu/sort/main.nf index 1c1b9ede824..2f24d33e775 100644 --- a/modules/nf-core/gnu/sort/main.nf +++ b/modules/nf-core/gnu/sort/main.nf @@ -5,7 +5,7 @@ process GNU_SORT { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(input) diff --git a/modules/nf-core/gunzip/main.nf b/modules/nf-core/gunzip/main.nf index 194dfc32263..16e2b83dc73 100644 --- a/modules/nf-core/gunzip/main.nf +++ b/modules/nf-core/gunzip/main.nf @@ -5,7 +5,7 @@ process GUNZIP { conda "conda-forge::sed=4.7" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(archive) diff --git a/modules/nf-core/igv/js/main.nf b/modules/nf-core/igv/js/main.nf index 198d6bc047c..f34a67d0da1 100644 --- a/modules/nf-core/igv/js/main.nf +++ b/modules/nf-core/igv/js/main.nf @@ -6,7 +6,7 @@ process IGV_JS { conda "conda-forge::sed=4.7" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(alignment), path(index) diff --git a/modules/nf-core/md5sum/main.nf b/modules/nf-core/md5sum/main.nf index e2ee9bdd0c3..a3843384df4 100644 --- a/modules/nf-core/md5sum/main.nf +++ b/modules/nf-core/md5sum/main.nf @@ -5,7 +5,7 @@ process MD5SUM { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(file) diff --git a/modules/nf-core/shasum/main.nf b/modules/nf-core/shasum/main.nf index b38da3646ad..4f53c050e66 100644 --- a/modules/nf-core/shasum/main.nf +++ b/modules/nf-core/shasum/main.nf @@ -5,7 +5,7 @@ process SHASUM { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(file) diff --git a/modules/nf-core/untar/main.nf b/modules/nf-core/untar/main.nf index 67f497ee8de..a4488c3595d 100644 --- a/modules/nf-core/untar/main.nf +++ b/modules/nf-core/untar/main.nf @@ -5,7 +5,7 @@ process UNTAR { conda "conda-forge::sed=4.7 bioconda::grep=3.4 conda-forge::tar=1.34" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(archive) diff --git a/modules/nf-core/untarfiles/main.nf b/modules/nf-core/untarfiles/main.nf index a93e81d4481..55d483719a8 100644 --- a/modules/nf-core/untarfiles/main.nf +++ b/modules/nf-core/untarfiles/main.nf @@ -5,7 +5,7 @@ process UNTARFILES { conda "conda-forge::sed=4.7 bioconda::grep=3.4 conda-forge::tar=1.34" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'docker.io/ubuntu:20.04' }" + 'docker.io/library/ubuntu:20.04' }" input: tuple val(meta), path(archive)