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318 update for tes compliance #320

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Fix snapshots.

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318 update for tes compliance #320

Fix snapshots.
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GitHub Actions / JUnit Test Report failed Sep 17, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --download_method aspera 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-9a9a9677f4ce0035e7db385bc0d084c.nf` [wise_marconi] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[f5/ecb6de] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[18/0ad50d] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[4d/3b2e7b] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[0c/e5a026] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[fb/f647be] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[2e/38215a] Submitted process > SRA:ASPERA_CLI (ERX1234253_ERR1160846)
[30/a157fb] Submitted process > SRA:ASPERA_CLI (DRX026011_DRR028935)
[8c/cbe438] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[da/f8f2dd] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[e0/2b3faf] Submitted process > SRA:ASPERA_CLI (SRX6725035_SRR9984183)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[96/77e9e4] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[bd/c449dd] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[ff/ab287c] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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