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Publish gsea reports #240

Merged
merged 6 commits into from
Mar 13, 2024
Merged

Publish gsea reports #240

merged 6 commits into from
Mar 13, 2024

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pinin4fjords
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We don't seem to be publishing the GSEA reports (just the tables). This addresses that.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/differentialabundance branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Feb 21, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit da6dd3f

+| ✅ 274 tests passed       |+
!| ❗   3 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

✅ Tests passed:

Run details

  • nf-core/tools version 2.13.1
  • Run at 2024-03-13 10:10:51

@pinin4fjords pinin4fjords merged commit 1f6adf5 into dev Mar 13, 2024
12 checks passed
@pinin4fjords pinin4fjords deleted the publish_gsea_reports branch March 13, 2024 10:39
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@WackerO WackerO WackerO approved these changes

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@pinin4fjords @WackerO