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Hi @fa2k , there is actually a PR #4023 in the works to add a config option for |
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That's fantastic! Thanks for the reply. |
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I'm working on a SLURM cluster that requires
--mem-per-cpu
, and does not allow--mem
.Can I force nextflow to use a modified copy of SlurmExecutor.groovy (https://github.com/nextflow-io/nextflow/blob/master/modules/nextflow/src/main/groovy/nextflow/executor/SlurmExecutor.groovy) or otherwise override the SLURM executor?
I can of course set clusterOptions to set
--mem-per-cpu
, but many processes rely on the value ofmemory
, so they won't work well if I setmemory
tonull
.Or is there maybe an alternative solution? I'm also going to get in touch with the cluster admins and see if they allow to use
--mem
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