First release.
---- /modules/modulefiles/bioinformatics ----
bedtools/2.26.0(default)
hisat/2.0.4(default)
spades/3.10.0(default)
bowtie/2.2.9(default)
igvtools/2.3.89(default)
sratoolkit/2.8.1(default)
bwa/0.7.15(default)
picard/2.8.1(default)
star/2.5.2b(default)
cufflinks/2.2.1(default)
samtools/1.3.1(default)
stringtie/1.3.0(default)
fastqc/0.11.5(default)
skewer/0.2.2(default)
tophat/2.1.1(default)
gatk/3.4.46(default)
snpeff/4.3.i(default)
vcftools/0.1.14(default)
---- /modules/modulefiles/general ----
java/8.0.111(default)
python/2.7.12(default)
python/3.6.0
ruby-install/0.6.1(default)
jupyterhub/0.7.2(default)
rlang/3.3.2(default)
ruby/2.4.0(default)
---- /modules/modulefiles/libs ----
bzip2/1.0.6(default)
openblas/0.2.19(default)
xz/5.2.2(default)
-
v0.0.2:
Improved PS1
Added
/Dockerfiles
for legacy maintenance of each version DockerfileAdded
lofreq/2.1.2(default)
-
v1.0.0:
Moved to debian 9.1.
Removed ENV HOME from Dockerfile.
Replaced python 2.7.12 with 2.7.13.
-
v1.0.1
Added
gsl/2.4.0
Added
methpipe/3.4.3
Added
walt/1.0.0
-
v1.1.0
Added
curl libcurl3 libcurl3-dev
Added
bwtool/face601
Added
perl/5.24.1
(cpanm)Added
jdk/8.0.151
Added
gatk/4.beta.5
-
v1.1.1
Added
pkg-config libfreetype6-dev libpng-dev liblmdb-dev libmariadb-client-lgpl-dev
Added
quast/4.6.0
Added
blast/2.7.1
Added
primer3/2.4.0
Added
trimmomatic/0.36
Added
rlang/3.4.3
Fixed
python/2.7.13
Fixed
rlang/3.3.2
-
v1.1.2
Added
stringtie/1.3.3
-
v1.1.3
Added
libtbb2 libtbb-dev
Added
flexbar/3.0.3
Added
bowtie/1.2.2
-
v1.1.4
Added
sspace/3.0.0
Added
signalp/0.4.1f
Added
targetp/0.1.1b
Added
prosite/2.3.4
Added
migec/1.2.7
Added
mixcr/2.1.9
Added
igrec/3.1.1
Added
igor/1.1.0
Added
mitools/1.5.0
Added
vdjtools/1.1.7
Added
homer/18.2.14