mappings_context.yml

{
   "_comments": "Auto generated from biolink-model.yaml by jsonldcontextgen.py version: 0.1.1\nGeneration date: 2021-02-19 20:25\nSchema: Biolink-Model\n\nid: https://w3id.org/biolink/biolink-model\ndescription: Entity and association taxonomy and datamodel for life-sciences data\nlicense: https://creativecommons.org/publicdomain/zero/1.0/\n",
   "@context": {
      "type": {
         "@id": "rdf:type"
      },
      "APO": "http://purl.obolibrary.org/obo/APO_",
      "Aeolus": "http://translator.ncats.nih.gov/Aeolus_",
      "BIOGRID": "http://identifiers.org/biogrid/",
      "BIOSAMPLE": "http://identifiers.org/biosample/",
      "BSPO": "http://purl.obolibrary.org/obo/BSPO_",
      "CAID": "http://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=",
      "CAS": "http://identifiers.org/cas/",
      "CATH": "http://identifiers.org/cath/",
      "CATH.SUPERFAMILY": "http://identifiers.org/cath.superfamily/",
      "CDD": "http://identifiers.org/cdd/",
      "CHADO": "http://gmod.org/wiki/Chado/",
      "CHEBI": "http://purl.obolibrary.org/obo/CHEBI_",
      "CHEMBL.COMPOUND": "http://identifiers.org/chembl.compound/",
      "CHEMBL.MECHANISM": "https://www.ebi.ac.uk/chembl/mechanism/inspect/",
      "CHEMBL.TARGET": "http://identifiers.org/chembl.target/",
      "CID": "http://pubchem.ncbi.nlm.nih.gov/compound/",
      "CL": "http://purl.obolibrary.org/obo/CL_",
      "CLINVAR": "http://identifiers.org/clinvar/",
      "CLO": "http://purl.obolibrary.org/obo/CLO_",
      "COAR_RESOURCE": "http://purl.org/coar/resource_type/",
      "CPT": "https://www.ama-assn.org/practice-management/cpt/",
      "CTD": "http://translator.ncats.nih.gov/CTD_",
      "ChemBank": "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=",
      "ClinVarVariant": "http://www.ncbi.nlm.nih.gov/clinvar/variation/",
      "DBSNP": "http://identifiers.org/dbsnp/",
      "DGIdb": "https://www.dgidb.org/interaction_types",
      "DOID": "http://purl.obolibrary.org/obo/DOID_",
      "DRUGBANK": "http://identifiers.org/drugbank/",
      "DrugCentral": "http://translator.ncats.nih.gov/DrugCentral_",
      "EC": "http://www.enzyme-database.org/query.php?ec=",
      "ECTO": "http://purl.obolibrary.org/obo/ECTO_",
      "EDAM-DATA": "http://edamontology.org/data_",
      "EDAM-FORMAT": "http://edamontology.org/format_",
      "EDAM-OPERATION": "http://edamontology.org/operation_",
      "EDAM-TOPIC": "http://edamontology.org/topic_",
      "EFO": "http://identifiers.org/efo/",
      "EGGNOG": "http://identifiers.org/eggnog/",
      "ENSEMBL": "http://identifiers.org/ensembl/",
      "ExO": "http://purl.obolibrary.org/obo/ExO_",
      "FAO": "http://purl.obolibrary.org/obo/FAO_",
      "FB": "http://identifiers.org/fb/",
      "FBcv": "http://purl.obolibrary.org/obo/FBcv_",
      "GAMMA": "http://translator.renci.org/GAMMA_",
      "GO": "http://purl.obolibrary.org/obo/GO_",
      "GOLD.META": "http://identifiers.org/gold.meta/",
      "GOP": "http://purl.obolibrary.org/obo/go#",
      "GOREL": "http://purl.obolibrary.org/obo/GOREL_",
      "GSID": "https://scholar.google.com/citations?user=",
      "GTEx": "https://www.gtexportal.org/home/gene/",
      "GTOPDB": "https://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=",
      "HAMAP": "http://identifiers.org/hamap/",
      "HANCESTRO": "http://www.ebi.ac.uk/ancestro/ancestro_",
      "HCPCS": "http://purl.bioontology.org/ontology/HCPCS/",
      "HGNC": "http://identifiers.org/hgnc/",
      "HGNC.FAMILY": "http://identifiers.org/hgnc.family/",
      "HMDB": "http://identifiers.org/hmdb/",
      "HP": "http://purl.obolibrary.org/obo/HP_",
      "HsapDv": "http://purl.obolibrary.org/obo/HsapDv_",
      "ICD0": "http://translator.ncats.nih.gov/ICD0_",
      "ICD10": "http://translator.ncats.nih.gov/ICD10_",
      "ICD9": "http://translator.ncats.nih.gov/ICD9_",
      "INCHI": "http://identifiers.org/inchi/",
      "INCHIKEY": "http://identifiers.org/inchikey/",
      "INTACT": "http://identifiers.org/intact/",
      "IUPHAR.FAMILY": "http://identifiers.org/iuphar.family/",
      "KEGG": "http://identifiers.org/kegg/",
      "KEGG.BRITE": "http://www.kegg.jp/entry/",
      "KEGG.COMPOUND": "http://identifiers.org/kegg.compound/",
      "KEGG.DGROUP": "http://www.kegg.jp/entry/",
      "KEGG.DISEASE": "http://identifiers.org/kegg.disease/",
      "KEGG.DRUG": "http://identifiers.org/kegg.drug/",
      "KEGG.ENVIRON": "http://identifiers.org/kegg.environ/",
      "KEGG.ENZYME": "http://www.kegg.jp/entry/",
      "KEGG.GENE": "http://www.kegg.jp/entry/",
      "KEGG.GLYCAN": "http://identifiers.org/kegg.glycan/",
      "KEGG.MODULE": "http://identifiers.org/kegg.module/",
      "KEGG.ORTHOLOGY": "http://identifiers.org/kegg.orthology/",
      "KEGG.RCLASS": "http://www.kegg.jp/entry/",
      "KEGG.REACTION": "http://identifiers.org/kegg.reaction/",
      "LOINC": "http://loinc.org/rdf/",
      "MEDDRA": "http://identifiers.org/meddra/",
      "MESH": "http://identifiers.org/mesh/",
      "MGI": "http://identifiers.org/mgi/",
      "MI": "http://purl.obolibrary.org/obo/MI_",
      "MIR": "http://identifiers.org/mir/",
      "MONDO": "http://purl.obolibrary.org/obo/MONDO_",
      "MP": "http://purl.obolibrary.org/obo/MP_",
      "MSigDB": "https://www.gsea-msigdb.org/gsea/msigdb/",
      "MetaCyc": "http://translator.ncats.nih.gov/MetaCyc_",
      "NCBIGENE": "http://identifiers.org/ncbigene/",
      "NCBITaxon": "http://purl.obolibrary.org/obo/NCBITaxon_",
      "NCIT": "http://purl.obolibrary.org/obo/NCIT_",
      "NDC": "http://identifiers.org/ndc/",
      "NDDF": "http://purl.bioontology.org/ontology/NDDF/",
      "NLMID": "https://www.ncbi.nlm.nih.gov/nlmcatalog/?term=",
      "OBAN": "http://purl.org/oban/",
      "OBOREL": "http://purl.obolibrary.org/obo/RO_",
      "OIO": "http://www.geneontology.org/formats/oboInOwl#",
      "OMIM": "http://purl.obolibrary.org/obo/OMIM_",
      "ORCID": "https://orcid.org/",
      "ORPHA": "http://www.orpha.net/ORDO/Orphanet_",
      "ORPHANET": "http://identifiers.org/orphanet/",
      "PANTHER.FAMILY": "http://identifiers.org/panther.family/",
      "PANTHER.PATHWAY": "http://identifiers.org/panther.pathway/",
      "PATO": "http://purl.obolibrary.org/obo/PATO_",
      "PATO-PROPERTY": "http://purl.obolibrary.org/obo/pato#",
      "PDQ": "https://www.cancer.gov/publications/pdq#",
      "PFAM": "http://identifiers.org/pfam/",
      "PHARMGKB.DRUG": "http://identifiers.org/pharmgkb.drug/",
      "PHARMGKB.PATHWAYS": "http://identifiers.org/pharmgkb.pathways/",
      "PHAROS": "http://pharos.nih.gov",
      "PIRSF": "http://identifiers.org/pirsf/",
      "PMID": "http://www.ncbi.nlm.nih.gov/pubmed/",
      "PO": "http://purl.obolibrary.org/obo/PO_",
      "POMBASE": "http://identifiers.org/pombase/",
      "PR": "http://purl.obolibrary.org/obo/PR_",
      "PRINTS": "http://identifiers.org/prints/",
      "PRODOM": "http://identifiers.org/prodom/",
      "PROSITE": "http://identifiers.org/prosite/",
      "PUBCHEM.COMPOUND": "http://identifiers.org/pubchem.compound/",
      "PUBCHEM.SUBSTANCE": "http://identifiers.org/pubchem.substance/",
      "PathWhiz": "http://smpdb.ca/pathways/#",
      "REACT": "http://www.reactome.org/PathwayBrowser/#/",
      "REPODB": "http://apps.chiragjpgroup.org/repoDB/",
      "RFAM": "http://identifiers.org/rfam/",
      "RGD": "http://identifiers.org/rgd/",
      "RHEA": "http://identifiers.org/rhea/",
      "RNACENTRAL": "http://identifiers.org/rnacentral/",
      "RO": "http://purl.obolibrary.org/obo/RO_",
      "RTXKG1": "http://kg1endpoint.rtx.ai/",
      "RXCUI": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=",
      "RXNORM": "http://purl.bioontology.org/ontology/RXNORM/",
      "ResearchID": "https://publons.com/researcher/",
      "SEMMEDDB": "https://skr3.nlm.nih.gov/SemMedDB",
      "SGD": "http://identifiers.org/sgd/",
      "SIDER.DRUG": "http://identifiers.org/sider.drug/",
      "SIO": "http://semanticscience.org/resource/SIO_",
      "SMART": "http://identifiers.org/smart/",
      "SMPDB": "http://identifiers.org/smpdb/",
      "SNOMEDCT": "http://identifiers.org/snomedct/",
      "SNPEFF": "http://translator.ncats.nih.gov/SNPEFF_",
      "SUPFAM": "http://identifiers.org/supfam/",
      "ScopusID": "https://www.scopus.com/authid/detail.uri?authorId=",
      "TAXRANK": "http://purl.obolibrary.org/obo/TAXRANK_",
      "TCDB": "http://identifiers.org/tcdb/",
      "TIGRFAM": "http://identifiers.org/tigrfam/",
      "UBERGRAPH": "http://translator.renci.org/ubergraph-axioms.ofn#",
      "UBERON": "http://purl.obolibrary.org/obo/UBERON_",
      "UBERON_CORE": "http://purl.obolibrary.org/obo/uberon/core#",
      "UMLS": "http://identifiers.org/umls/",
      "UMLSSC": "https://metamap.nlm.nih.gov/Docs/SemanticTypes_2018AB.txt/code#",
      "UMLSSG": "https://metamap.nlm.nih.gov/Docs/SemGroups_2018.txt/group#",
      "UMLSST": "https://metamap.nlm.nih.gov/Docs/SemanticTypes_2018AB.txt/type#",
      "UNII": "http://identifiers.org/unii/",
      "UNIPROT.ISOFORM": "http://identifiers.org/uniprot.isoform/",
      "UPHENO": "http://purl.obolibrary.org/obo/UPHENO_",
      "UniProtKB": "http://identifiers.org/uniprot/",
      "VANDF": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF/",
      "VMC": "https://github.com/ga4gh/vr-spec/",
      "WB": "http://identifiers.org/wb/",
      "WBPhenotype": "http://purl.obolibrary.org/obo/WBPhenotype_",
      "WBVocab": "http://bio2rdf.org/wormbase_vocabulary",
      "WIKIDATA": "https://www.wikidata.org/wiki/",
      "WIKIDATA_PROPERTY": "https://www.wikidata.org/wiki/Property:",
      "WIKIPATHWAYS": "http://identifiers.org/wikipathways/",
      "WormBase": "https://www.wormbase.org/get?name=",
      "ZFIN": "http://identifiers.org/zfin/",
      "ZP": "http://purl.obolibrary.org/obo/ZP_",
      "alliancegenome": "https://www.alliancegenome.org/",
      "biolink": "https://w3id.org/biolink/vocab/",
      "biolinkml": "https://w3id.org/biolink/biolinkml/",
      "chembio": "http://translator.ncats.nih.gov/chembio_",
      "dcat": "http://www.w3.org/ns/dcat#",
      "dct": "http://purl.org/dc/terms/",
      "dictyBase": "http://dictybase.org/gene/",
      "doi": "https://doi.org/",
      "fabio": "http://purl.org/spar/fabio/",
      "foaf": "http://xmlns.com/foaf/0.1/",
      "foodb.compound": "http://foodb.ca/compounds/",
      "gff3": "https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#",
      "gpi": "https://github.com/geneontology/go-annotation/blob/master/specs/gpad-gpi-2-0.md#",
      "gtpo": "https://rdf.guidetopharmacology.org/ns/gtpo#",
      "hetio": "http://translator.ncats.nih.gov/hetio_",
      "interpro": "https://www.ebi.ac.uk/interpro/entry/",
      "isbn": "https://www.isbn-international.org/identifier/",
      "isni": "https://isni.org/isni/",
      "issn": "https://portal.issn.org/resource/ISSN/",
      "medgen": "https://www.ncbi.nlm.nih.gov/medgen/",
      "oboformat": "http://www.geneontology.org/formats/oboInOWL#",
      "pav": "http://purl.org/pav/",
      "prov": "http://www.w3.org/ns/prov#",
      "qud": "http://qudt.org/1.1/schema/qudt#",
      "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
      "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
      "schema": "http://schema.org/",
      "skos": "https://www.w3.org/TR/skos-reference/#",
      "wgs": "http://www.w3.org/2003/01/geo/wgs84_pos",
      "xsd": "http://www.w3.org/2001/XMLSchema#",
      "@vocab": "https://w3id.org/biolink/vocab/",
      "actively_involved_in": {
         "@type": "@id"
      },
      "affected_by": {
         "@type": "@id"
      },
      "affects": {
         "@type": "@id"
      },
      "affects_abundance_of": {
         "@type": "@id"
      },
      "affects_activity_of": {
         "@type": "@id"
      },
      "affects_degradation_of": {
         "@type": "@id"
      },
      "affects_expression_in": {
         "@type": "@id"
      },
      "affects_expression_of": {
         "@type": "@id"
      },
      "affects_folding_of": {
         "@type": "@id"
      },
      "affects_localization_of": {
         "@type": "@id"
      },
      "affects_metabolic_processing_of": {
         "@type": "@id"
      },
      "affects_molecular_modification_of": {
         "@type": "@id"
      },
      "affects_mutation_rate_of": {
         "@type": "@id"
      },
      "affects_response_to": {
         "@type": "@id"
      },
      "affects_risk_for": {
         "@type": "@id"
      },
      "affects_secretion_of": {
         "@type": "@id"
      },
      "affects_splicing_of": {
         "@type": "@id"
      },
      "affects_stability_of": {
         "@type": "@id"
      },
      "affects_synthesis_of": {
         "@type": "@id"
      },
      "affects_transport_of": {
         "@type": "@id"
      },
      "affects_uptake_of": {
         "@type": "@id"
      },
      "affiliation": {
         "@type": "@id"
      },
      "id": "@id",
      "ameliorates": {
         "@type": "@id"
      },
      "approved_for_treatment_by": {
         "@type": "@id"
      },
      "approved_to_treat": {
         "@type": "@id"
      },
      "association_type": {
         "@type": "@id"
      },
      "author": {
         "@type": "@id"
      },
      "biomarker_for": {
         "@type": "@id"
      },
      "broad_match": {
         "@type": "@id"
      },
      "capable_of": {
         "@type": "@id"
      },
      "catalyst_qualifier": {
         "@type": "@id"
      },
      "category": {
         "@type": "@id"
      },
      "caused_by": {
         "@type": "@id"
      },
      "causes": {
         "@type": "@id"
      },
      "causes_adverse_event": {
         "@type": "@id"
      },
      "chemically_similar_to": {
         "@type": "@id"
      },
      "chi_squared_statistic": {
         "@type": "xsd:float"
      },
      "clinical_modifier_qualifier": {
         "@type": "@id"
      },
      "close_match": {
         "@type": "@id"
      },
      "coexists_with": {
         "@type": "@id"
      },
      "coexpressed_with": {
         "@type": "@id"
      },
      "colocalizes_with": {
         "@type": "@id"
      },
      "condition_associated_with_gene": {
         "@type": "@id"
      },
      "contraindicated_for": {
         "@type": "@id"
      },
      "contributes_to": {
         "@type": "@id"
      },
      "contributor": {
         "@type": "@id"
      },
      "correlated_with": {
         "@type": "@id"
      },
      "creation_date": {
         "@type": "xsd:date"
      },
      "dataset_download_url": {
         "@id": "dcat:downloadURL"
      },
      "decreases_abundance_of": {
         "@type": "@id"
      },
      "decreases_activity_of": {
         "@type": "@id"
      },
      "decreases_degradation_of": {
         "@type": "@id"
      },
      "decreases_expression_of": {
         "@type": "@id"
      },
      "decreases_folding_of": {
         "@type": "@id"
      },
      "decreases_localization_of": {
         "@type": "@id"
      },
      "decreases_metabolic_processing_of": {
         "@type": "@id"
      },
      "decreases_molecular_interaction": {
         "@type": "@id"
      },
      "decreases_molecular_modification_of": {
         "@type": "@id"
      },
      "decreases_mutation_rate_of": {
         "@type": "@id"
      },
      "decreases_response_to": {
         "@type": "@id"
      },
      "decreases_secretion_of": {
         "@type": "@id"
      },
      "decreases_splicing_of": {
         "@type": "@id"
      },
      "decreases_stability_of": {
         "@type": "@id"
      },
      "decreases_synthesis_of": {
         "@type": "@id"
      },
      "decreases_transport_of": {
         "@type": "@id"
      },
      "decreases_uptake_of": {
         "@type": "@id"
      },
      "derives_from": {
         "@type": "@id"
      },
      "derives_into": {
         "@type": "@id"
      },
      "description": {
         "@id": "dct:description"
      },
      "develops_from": {
         "@type": "@id"
      },
      "directly_interacts_with": {
         "@type": "@id"
      },
      "disease_has_basis_in": {
         "@type": "@id"
      },
      "disrupted_by": {
         "@type": "@id"
      },
      "disrupts": {
         "@type": "@id"
      },
      "download_url": {
         "@id": "dcat:downloadURL"
      },
      "edge_label": {
         "@type": "@id",
         "@id": "rdf:predicate"
      },
      "editor": {
         "@type": "@id"
      },
      "enabled_by": {
         "@type": "@id"
      },
      "enables": {
         "@type": "@id"
      },
      "end_interbase_coordinate": {
         "@type": "xsd:integer"
      },
      "exacerbates": {
         "@type": "@id"
      },
      "exact_match": {
         "@type": "@id"
      },
      "expressed_in": {
         "@type": "@id"
      },
      "expresses": {
         "@type": "@id"
      },
      "expression_site": {
         "@type": "@id"
      },
      "filler": {
         "@type": "@id"
      },
      "food_component_of": {
         "@type": "@id"
      },
      "frequency_qualifier": {
         "@type": "UO:0000105"
      },
      "gene_associated_with_condition": {
         "@type": "@id"
      },
      "genetic_association": {
         "@type": "@id"
      },
      "genetically_interacts_with": {
         "@type": "@id"
      },
      "has_active_ingredient": {
         "@type": "@id"
      },
      "has_attribute": {
         "@type": "@id"
      },
      "has_attribute_type": {
         "@type": "@id"
      },
      "has_biomarker": {
         "@type": "@id"
      },
      "has_completed": {
         "@type": "@id"
      },
      "has_confidence_level": {
         "@type": "@id"
      },
      "has_constituent": {
         "@type": "@id"
      },
      "has_count": {
         "@type": "xsd:integer"
      },
      "has_dataset": {
         "@type": "@id",
         "@id": "dct:source"
      },
      "has_decreased_amount": {
         "@type": "@id"
      },
      "has_device": {
         "@type": "@id"
      },
      "has_distribution": {
         "@type": "@id",
         "@id": "dct:distribution"
      },
      "has_drug": {
         "@type": "@id"
      },
      "has_evidence": {
         "@type": "@id"
      },
      "has_excipient": {
         "@type": "@id"
      },
      "has_food_component": {
         "@type": "@id"
      },
      "has_gene": {
         "@type": "@id"
      },
      "has_gene_or_gene_product": {
         "@type": "@id"
      },
      "has_gene_product": {
         "@type": "@id"
      },
      "has_increased_amount": {
         "@type": "@id"
      },
      "has_input": {
         "@type": "@id"
      },
      "has_metabolite": {
         "@type": "@id"
      },
      "has_molecular_consequence": {
         "@type": "@id"
      },
      "has_not_completed": {
         "@type": "@id"
      },
      "has_numeric_value": {
         "@type": "xsd:double"
      },
      "has_nutrient": {
         "@type": "@id"
      },
      "has_output": {
         "@type": "@id"
      },
      "has_part": {
         "@type": "@id"
      },
      "has_participant": {
         "@type": "@id"
      },
      "has_percentage": {
         "@type": "xsd:double"
      },
      "has_phenotype": {
         "@type": "@id"
      },
      "has_population_context": {
         "@type": "@id"
      },
      "has_procedure": {
         "@type": "@id"
      },
      "has_qualitative_value": {
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      "systematic_synonym": {
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      "xenologous_to": {
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   }
}