{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":763575757,"defaultBranch":"main","name":"caduceus","ownerLogin":"kuleshov-group","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-02-26T14:53:53.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/89050080?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712779452.0","currentOid":""},"activityList":{"items":[{"before":"8f04348b51de01a80e6d3e6dadc9a61f39438cc6","after":"6b451a8b1a8e5d55b76b4e68565ed551fc53de64","ref":"refs/heads/main","pushedAt":"2024-08-21T03:05:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix typo in GB example snippet","shortMessageHtmlLink":"Fix typo in GB example snippet"}},{"before":"0e2977ea0da150857ce6c757104cbf5dee5fa87a","after":"8f04348b51de01a80e6d3e6dadc9a61f39438cc6","ref":"refs/heads/main","pushedAt":"2024-06-25T13:45:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}},{"before":"f05031fb760afda342d95b926a943b37dcdde97e","after":"0e2977ea0da150857ce6c757104cbf5dee5fa87a","ref":"refs/heads/main","pushedAt":"2024-06-16T01:31:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}},{"before":"0103ca9d159ff8153c6308ca8a5c8b2618036258","after":"26143aa7992f939eae8d32c0695b7d362d69b5d2","ref":"refs/heads/hf_finetune","pushedAt":"2024-06-11T02:21:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix sequence classifier init","shortMessageHtmlLink":"Fix sequence classifier init"}},{"before":"901884f6a6c9ad82ae36cbfdb056b272d9a4c64a","after":"f05031fb760afda342d95b926a943b37dcdde97e","ref":"refs/heads/main","pushedAt":"2024-06-11T02:20:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix sequence classifier init","shortMessageHtmlLink":"Fix sequence classifier init"}},{"before":"17452f8c4066f5d562fdcfb3e4f28534cdc31015","after":"901884f6a6c9ad82ae36cbfdb056b272d9a4c64a","ref":"refs/heads/main","pushedAt":"2024-05-29T18:08:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix vep seq lens. Closes #28.","shortMessageHtmlLink":"Fix vep seq lens. Closes #28."}},{"before":"e12b6f24d0a7cfb47f5a105df49f79f9fa822ca2","after":"0103ca9d159ff8153c6308ca8a5c8b2618036258","ref":"refs/heads/hf_finetune","pushedAt":"2024-05-29T18:07:41.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Merge branch 'hf_finetune' of github.com:kuleshov-group/caduceus into hf_finetune","shortMessageHtmlLink":"Merge branch 'hf_finetune' of github.com:kuleshov-group/caduceus into…"}},{"before":"947b7751a091635fe6ba759e0a4edebc09977d69","after":"e12b6f24d0a7cfb47f5a105df49f79f9fa822ca2","ref":"refs/heads/hf_finetune","pushedAt":"2024-04-16T21:14:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix typo\n\nPoint to `_hf` script","shortMessageHtmlLink":"Fix typo"}},{"before":"88ff784832bd9f94a43c2d57f050a2324527edf6","after":"947b7751a091635fe6ba759e0a4edebc09977d69","ref":"refs/heads/hf_finetune","pushedAt":"2024-04-10T20:46:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Enable using HF model for downstream task finetune","shortMessageHtmlLink":"Enable using HF model for downstream task finetune"}},{"before":"17452f8c4066f5d562fdcfb3e4f28534cdc31015","after":"88ff784832bd9f94a43c2d57f050a2324527edf6","ref":"refs/heads/hf_finetune","pushedAt":"2024-04-10T20:30:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Enable using HF model for downstream task finetune","shortMessageHtmlLink":"Enable using HF model for downstream task finetune"}},{"before":null,"after":"17452f8c4066f5d562fdcfb3e4f28534cdc31015","ref":"refs/heads/hf_finetune","pushedAt":"2024-04-10T20:04:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add vep task","shortMessageHtmlLink":"Add vep task"}},{"before":"712c651133db14b79c0fcc094213934b1313b892","after":"17452f8c4066f5d562fdcfb3e4f28534cdc31015","ref":"refs/heads/main","pushedAt":"2024-04-08T14:15:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add vep task","shortMessageHtmlLink":"Add vep task"}},{"before":"0efeae802dbdb52c904f5c49052419a526dfaa8f","after":"712c651133db14b79c0fcc094213934b1313b892","ref":"refs/heads/main","pushedAt":"2024-04-05T15:06:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Edit naming to match downstream tasks","shortMessageHtmlLink":"Edit naming to match downstream tasks"}},{"before":"6ebb434f55b2ee5dab6e6f55c41581b113786dd9","after":"0efeae802dbdb52c904f5c49052419a526dfaa8f","ref":"refs/heads/main","pushedAt":"2024-03-29T13:38:49.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Merge pull request #10 from eltociear/patch-1\n\nUpdate README.md","shortMessageHtmlLink":"Merge pull request #10 from eltociear/patch-1"}},{"before":"c50dca8cdeddb1fb02e0246f26356f2f22739b1f","after":"6ebb434f55b2ee5dab6e6f55c41581b113786dd9","ref":"refs/heads/main","pushedAt":"2024-03-14T20:54:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix rcps channel splitting bug; Closes #5","shortMessageHtmlLink":"Fix rcps channel splitting bug; Closes #5"}},{"before":"3b843a2ac960945fbb820d8a1876ca3d7a2fb789","after":"c50dca8cdeddb1fb02e0246f26356f2f22739b1f","ref":"refs/heads/main","pushedAt":"2024-03-13T00:32:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Update env file; Closes #2","shortMessageHtmlLink":"Update env file; Closes #2"}},{"before":"b06b440702076c2d6339e70c01ac609e9e60800a","after":"3b843a2ac960945fbb820d8a1876ca3d7a2fb789","ref":"refs/heads/main","pushedAt":"2024-03-07T03:26:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Remove citation cff","shortMessageHtmlLink":"Remove citation cff"}},{"before":"12127cc7d5b102a3a3d26fda45c594cf03e20168","after":"b06b440702076c2d6339e70c01ac609e9e60800a","ref":"refs/heads/main","pushedAt":"2024-03-07T03:16:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add citation cff","shortMessageHtmlLink":"Add citation cff"}},{"before":"34998a14c6f70e047f3e2e496a22c233635b3fce","after":"12127cc7d5b102a3a3d26fda45c594cf03e20168","ref":"refs/heads/main","pushedAt":"2024-03-07T02:07:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add arxiv","shortMessageHtmlLink":"Add arxiv"}},{"before":"1fa742dfd4d86d033edf99c0ab556334c4ebf8ec","after":"34998a14c6f70e047f3e2e496a22c233635b3fce","ref":"refs/heads/main","pushedAt":"2024-03-06T21:08:37.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix bug for fused_add_norm false","shortMessageHtmlLink":"Fix bug for fused_add_norm false"}},{"before":"9f3501f6e4512ed415c709b6f60deaad6e85ee47","after":"1fa742dfd4d86d033edf99c0ab556334c4ebf8ec","ref":"refs/heads/main","pushedAt":"2024-03-04T19:27:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add license","shortMessageHtmlLink":"Add license"}},{"before":"6920a1fa0812b7571f5f68eb007dfea3d5d7420c","after":"9f3501f6e4512ed415c709b6f60deaad6e85ee47","ref":"refs/heads/main","pushedAt":"2024-03-04T19:22:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}},{"before":"33506e2b22e844736de3ab5a2fd6ad3a8dd71053","after":"6920a1fa0812b7571f5f68eb007dfea3d5d7420c","ref":"refs/heads/main","pushedAt":"2024-03-04T19:08:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add seaborn","shortMessageHtmlLink":"Add seaborn"}},{"before":"5ba5bfdd1e34004c450176f7c7143b47a3ce659b","after":"33506e2b22e844736de3ab5a2fd6ad3a8dd71053","ref":"refs/heads/main","pushedAt":"2024-02-29T23:04:08.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add PS link","shortMessageHtmlLink":"Add PS link"}},{"before":"2812fc30e4d1b8eea8e3318bf158dc526b707fc6","after":"5ba5bfdd1e34004c450176f7c7143b47a3ce659b","ref":"refs/heads/main","pushedAt":"2024-02-27T15:33:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Update pretrain scripts","shortMessageHtmlLink":"Update pretrain scripts"}},{"before":"a372ede4c2b3dc1e6e69e073c32e27ef637b3420","after":"2812fc30e4d1b8eea8e3318bf158dc526b707fc6","ref":"refs/heads/main","pushedAt":"2024-02-27T02:43:53.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Initial commit","shortMessageHtmlLink":"Initial commit"}},{"before":"98adeec2ffd57fbe382ba066395d4a203985c716","after":"a372ede4c2b3dc1e6e69e073c32e27ef637b3420","ref":"refs/heads/main","pushedAt":"2024-02-27T02:43:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Remove extra file","shortMessageHtmlLink":"Remove extra file"}},{"before":"ec7efc586545ea06093205452797d6d8de2254ac","after":"98adeec2ffd57fbe382ba066395d4a203985c716","ref":"refs/heads/main","pushedAt":"2024-02-27T02:42:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Clean up scripts","shortMessageHtmlLink":"Clean up scripts"}},{"before":"a472e67934368c833f7ca09de2705db78ad291aa","after":"ec7efc586545ea06093205452797d6d8de2254ac","ref":"refs/heads/main","pushedAt":"2024-02-26T16:31:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Add HF link","shortMessageHtmlLink":"Add HF link"}},{"before":null,"after":"a472e67934368c833f7ca09de2705db78ad291aa","ref":"refs/heads/main","pushedAt":"2024-02-26T15:49:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"yair-schiff","name":"Yair Schiff","path":"/yair-schiff","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35781889?s=80&v=4"},"commit":{"message":"Initial commit","shortMessageHtmlLink":"Initial commit"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0yMVQwMzowNToyNS4wMDAwMDBazwAAAASfuE4j","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0yMVQwMzowNToyNS4wMDAwMDBazwAAAASfuE4j","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMi0yNlQxNTo0OToyOS4wMDAwMDBazwAAAAQFj9y5"}},"title":"Activity · kuleshov-group/caduceus"}