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env.yml
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env.yml
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name: malaria-profiler
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- bc=1.07.1=h516909a_0
- bcftools=1.12=h45bccc9_1
- bedtools=2.30.0=h468198e_3
- boost-cpp=1.74.0=h75c5d50_8
- brotlipy=0.7.0=py39hb9d737c_1004
- bwa=0.7.17=h7132678_9
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.3.29=h06a4308_1
- certifi=2021.10.8=py39hf3d152e_2
- cffi=1.15.0=py39h4bc2ebd_0
- charset-normalizer=2.0.12=pyhd8ed1ab_0
- colorama=0.4.4=pyh9f0ad1d_0
- cryptography=36.0.2=py39hd97740a_1
- curl=7.83.0=h7bff187_0
- dbus=1.13.18=hb2f20db_0
- delly=0.8.7=he03298f_1
- expat=2.4.8=h27087fc_0
- freebayes=1.3.5=py39hba5d119_3
- freetype=2.11.0=h70c0345_0
- gatk4=4.2.6.1=hdfd78af_0
- gettext=0.21.0=hf68c758_0
- git=2.35.3=pl5321h36853c3_0
- glib=2.70.2=h780b84a_4
- glib-tools=2.70.2=h780b84a_4
- gsl=2.6=he838d99_2
- htslib=1.12=h9093b5e_1
- icu=70.1=h27087fc_0
- idna=3.3=pyhd8ed1ab_0
- k8=0.2.5=hd03093a_2
- keyutils=1.6.1=h166bdaf_0
- kmc=3.2.1=hf1761c0_2
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=14_linux64_openblas
- libcblas=3.9.0=14_linux64_openblas
- libcurl=7.83.0=h7bff187_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20210714=h7f8727e_0
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=11.2.0=h1d223b6_16
- libgfortran-ng=11.2.0=h69a702a_16
- libgfortran5=11.2.0=h5c6108e_16
- libglib=2.70.2=h174f98d_4
- libgomp=11.2.0=h1d223b6_16
- libiconv=1.16=h516909a_0
- libnghttp2=1.47.0=h727a467_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.20=pthreads_h78a6416_0
- libpng=1.6.37=hed695b0_2
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=he4da1e4_16
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.13=h22db469_0
- libzlib=1.2.11=h166bdaf_1014
- lofreq=2.1.5=py39h2dde2f4_4
- lz4-c=1.9.3=h9c3ff4c_1
- minimap2=2.24=h7132678_1
- ncurses=6.2=h58526e2_4
- openjdk=11.0.13=h87a67e3_0
- openssl=1.1.1n=h166bdaf_0
- parallel=20220222=ha770c72_0
- pathogen-profiler=2.0.0=pypyh5e36f6f_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=h032f7d1_0
- perl=5.32.1=2_h7f98852_perl5
- pilon=1.24=hdfd78af_0
- pip=22.0.4=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pysocks=1.7.1=py39hf3d152e_5
- python=3.9.9=h62f1059_0_cpython
- python_abi=3.9=2_cp39
- readline=8.1=h46c0cb4_0
- requests=2.27.1=pyhd8ed1ab_0
- samclip=0.4.0=hdfd78af_1
- samtools=1.12=h9aed4be_1
- setuptools=62.1.0=py39hf3d152e_0
- snpeff=5.0=hdfd78af_1
- sqlite=3.38.2=hc218d9a_0
- tabixpp=1.1.0=he28291e_6
- tk=8.6.12=h27826a3_0
- tqdm=4.64.0=pyhd8ed1ab_0
- trimmomatic=0.39=hdfd78af_2
- tzdata=2022a=h191b570_0
- urllib3=1.26.9=pyhd8ed1ab_0
- vcflib=1.0.2=h3198e80_5
- wheel=0.37.1=pyhd8ed1ab_0
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h166bdaf_1014
- zstd=1.5.2=ha95c52a_0
prefix: /home/jody/miniconda3/envs/test