repLoad failing to load in TRUST4 data

[sammurray13]

Hi,

I have been trying to load in TRUST4 _report.tsv data into immunarch, using the repLoad function. As per some of the other bug reports, i loaded in the dev version of immunarch (using devtools::install_github("immunomind/immunarch", ref="dev")) to attempt to overcome any issues with loading in TRUST4 data. However, when i try and load in the data I get this error message:

== Step 1/3: loading repertoire files... ==

Processing "" ...
-- [1/1] Parsing "inputs/TRUST_outs/IDT0097_report.tsv" -- vdjtools
Error in vroom_(file, delim = delim %||% col_types$delim, col_names = col_names, :
bad value

and the data does not load in.

Attached is a data sample for reproducing the error:
IDT0097_report.txt

Using immunarch version 1.0.0 in R version 4.2.2 (2022-10-31)

Any help you can offer would be very much appreciated.
Thanks,
Sam

[sammurray13]

Hi,

This appears to a problem with vroom/readr. I was able to fix the problem by running readr::local_edition(1) prior to running the function as per tidyverse/vroom#519 (comment)

Thanks,
Sam