| Link | Language | Description |
|---|---|---|
| 01_BRONCO_German.ipynb | 🇩🇪 | Candidate generation and supervised re-ranking using the BRONCO corpus. Shows how you can configure multiple dictionaries in the same config file. |
| 02_spaCy_German.ipynb | 🇩🇪 | Using a spaCy NER model with xMEN Shows how to build a pipeline without labelled data using candidate generation, type filtering and pre-trained re-rankers |
| 03_SNOMED_Linking_German.ipynb | 🇩🇪 | Linking against codes in UMLS source vocabularies (here SNOMED CT) |
| 04_Drug_Names_ATC.ipynb | 🇩🇪 | Normalization of medication mentions (without surrounding text) to ATC codes |
| Link | Language | Description |
|---|---|---|
| https://github.com/hpi-dhc/symptemist | 🇪🇸 | BioCreative VIII SympTEMIST + LLM-based Entity Simplification |
More examples for configurations can be found in the Benchmarks folder.
| Benchmark | Language |
|---|---|
| Quaero | 🇫🇷 |
| MedMentions | 🇬🇧 |
| DisTEMIST | 🇪🇸 |
| SympTEMIST | 🇪🇸 |
| BRONCO | 🇩🇪 |
| Mantra | 🇬🇧 🇫🇷 🇪🇸 🇩🇪 🇳🇱 |