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I am using Clair on my raw ONT reads (human), and found the following two calls that I don't know how to handle. They essentially differ by 1 base. So I hope there's a "merge" module in Clair to post process such "duplicated" calls.
chr1 25808786 . GGAGGTGAGGACAGCTGGGGTGCGACGTGGGGCCCCTCC G 691 . . GT:GQ:DP:AF 0/1:691:31:0.2258
chr1 25808787 . GAGGTGAGGACAGCTGGGGTGCGACGTGGGGCCCCTCCGC G 582 . . GT:GQ:DP:AF 0/1:582:31:0.3548
Unfortunately, I cannot share the data.
Thanks!
The text was updated successfully, but these errors were encountered:
Yes, that's a quick workaround, although one can imagine some kind of threshold need to be defined for which two variants are to be considered "should be the same".
The case will be more complicated when insertions are involved, as one need to compare the inserted sequence as well.
Hi,
I am using Clair on my raw ONT reads (human), and found the following two calls that I don't know how to handle. They essentially differ by 1 base. So I hope there's a "merge" module in Clair to post process such "duplicated" calls.
Unfortunately, I cannot share the data.
Thanks!
The text was updated successfully, but these errors were encountered: