nf-core-sarek.json

{
  "description": "Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing.",
  "launch": {
    "pipeline": "https://github.com/nf-core/sarek",
    "revision": "3.1.2",
    "configProfiles": [
      "test"
    ],
    "configText": "",
    "paramsText": "input: 'https://api.tower.nf/workspaces/138659136604200/datasets/31MNGqAiTAz464AECz5Ujr/v/1/n/sarek-samples.csv'\noutdir: 'az://seqeralabs-showcase/nf-core-sarek/results'",
    "preRunScript": "yum install jq -y\nexport NXF_VER=$(curl -s https://api.github.com/repos/nextflow-io/nextflow/tags | jq -r '.[].name' | head -n 1 | cut -c2-)",
    "resume": false,
    "pullLatest": false,
    "stubRun": false
  }
}