NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(Abiotic,forced)
S3method(Abiotic,null)
S3method(AreaSpray,null)
S3method(AreaSprayEffectSizes,null)
S3method(AreaSprayEffects,null)
S3method(AvailableBlood,forced)
S3method(AvailableBlood,setup)
S3method(AvailableBlood,static)
S3method(AvailableHabitat,forced)
S3method(AvailableHabitat,simple)
S3method(AvailableHabitat,static)
S3method(AvailableSugar,forced)
S3method(AvailableSugar,static)
S3method(BedNetEffectSizes,lemenach)
S3method(BedNetEffectSizes,null)
S3method(BedNetEffects,lemenach)
S3method(BedNetEffects,null)
S3method(Behavior,forced)
S3method(Behavior,null)
S3method(Bionomics,Ldynamic)
S3method(Bionomics,Mdynamic)
S3method(Bionomics,dynamic)
S3method(Bionomics,setup)
S3method(Bionomics,static)
S3method(Births,zero)
S3method(CareSeeking,null)
S3method(Civil,forced)
S3method(Civil,null)
S3method(Clinic,null)
S3method(Control,forced)
S3method(Control,null)
S3method(Control,static)
S3method(Development,null)
S3method(DistributeBedNets,null)
S3method(EIP,fixed)
S3method(EIP,null)
S3method(EggLaying,dynamic)
S3method(EggLaying,setup)
S3method(EggLaying,simple)
S3method(EggLaying,static)
S3method(F_H,SIP_dts)
S3method(F_H,SIS_dts)
S3method(F_H,trace)
S3method(F_X,SIP_dts)
S3method(F_X,SIS_dts)
S3method(F_X,trace)
S3method(F_alpha,basic_dts)
S3method(F_alpha,stages_dts)
S3method(F_alpha,trace)
S3method(F_b,SIP_dts)
S3method(F_b,SIS_dts)
S3method(F_b,trace)
S3method(F_eggs,ENBRQ_dts)
S3method(F_eggs,Gtrace)
S3method(F_eggs,RM_dts)
S3method(F_eggs,RMlumpy)
S3method(F_eggs,Ztrace)
S3method(F_eggs,basicM_dts)
S3method(F_f,dddn)
S3method(F_f,static)
S3method(F_f,type2)
S3method(F_foi,nb)
S3method(F_foi,pois)
S3method(F_fqM,ENBRQ_dts)
S3method(F_fqM,Gtrace)
S3method(F_fqM,RM_dts)
S3method(F_fqM,RMlumpy)
S3method(F_fqM,Ztrace)
S3method(F_fqM,basicM_dts)
S3method(F_fqZ,ENBRQ_dts)
S3method(F_fqZ,Gtrace)
S3method(F_fqZ,RM_dts)
S3method(F_fqZ,RMlumpy)
S3method(F_fqZ,Ztrace)
S3method(F_fqZ,basicM_dts)
S3method(F_nu,dddn)
S3method(F_nu,static)
S3method(F_nu,type2)
S3method(F_p,dddn)
S3method(F_p,static)
S3method(F_pr,SIP_dts)
S3method(F_pr,SIS_dts)
S3method(F_pr,trace)
S3method(F_q,dddn)
S3method(F_q,dynamic)
S3method(F_q,static)
S3method(F_sigma,dddn)
S3method(F_sigma,static)
S3method(HTC,SIP_dts)
S3method(HTC,SIS_dts)
S3method(HabitatDynamics,static)
S3method(Hydrology,null)
S3method(IRS_EffectSizes,null)
S3method(IRS_Effects,null)
S3method(LBionomics,basic_dts)
S3method(LBionomics,stages_dts)
S3method(LBionomics,trace)
S3method(LSM_EffectSizes,null)
S3method(LSM_Effects,null)
S3method(LocalFrac,dynamic)
S3method(LocalFrac,static)
S3method(MBionomics,ENBRQ_dts)
S3method(MBionomics,Gtrace)
S3method(MBionomics,RM_dts)
S3method(MBionomics,RMlumpy)
S3method(MBionomics,Ztrace)
S3method(MBionomics,basicM_dts)
S3method(MassMedical,forced)
S3method(MassMedical,null)
S3method(OtherBloodHosts,static)
S3method(OviTraps,null)
S3method(OwnBedNet,null)
S3method(Rainfall,null)
S3method(Relative_Humidity,null)
S3method(Resources,forced)
S3method(Resources,setup)
S3method(Resources,static)
S3method(Shock,null)
S3method(SprayHouses,null)
S3method(SugarBaitEffectSizes,null)
S3method(SugarBaitEffects,null)
S3method(SugarBaits,null)
S3method(SugarDynamics,static)
S3method(Temperature,null)
S3method(Transmission,dynamic)
S3method(Transmission,setup)
S3method(Transmission,static)
S3method(TreatHabitats,null)
S3method(UseBedNet,null)
S3method(VectorControl,control)
S3method(VectorControl,null)
S3method(VectorControlEffectSizes,control)
S3method(VectorControlEffectSizes,null)
S3method(VectorControlEffects,control)
S3method(VectorControlEffects,null)
S3method(Visitors,basic)
S3method(Visitors,static)
S3method(Weather,forced)
S3method(Weather,null)
S3method(check_abiotic,forced)
S3method(check_abiotic,null)
S3method(check_civil,forced)
S3method(check_civil,null)
S3method(compute_terms,cohort)
S3method(compute_terms,dts)
S3method(compute_terms,human)
S3method(compute_terms,na)
S3method(dHdt,zero)
S3method(dLdt,basic_dts)
S3method(dLdt,stages_dts)
S3method(dLdt,trace)
S3method(dMYZdt,ENBRQ_dts)
S3method(dMYZdt,Gtrace)
S3method(dMYZdt,RM_dts)
S3method(dMYZdt,RMlumpy)
S3method(dMYZdt,Ztrace)
S3method(dMYZdt,basicM_dts)
S3method(dXdt,SIP_dts)
S3method(dXdt,SIS_dts)
S3method(dXdt,trace)
S3method(dts_plot_X,SIP_dts)
S3method(dts_plot_X,SIS_dts)
S3method(dts_solve,aqua)
S3method(dts_solve,cohort)
S3method(dts_solve,dts)
S3method(dts_solve,human)
S3method(dts_solve,mosy)
S3method(get_inits_L,basic_dts)
S3method(get_inits_L,stages_dts)
S3method(get_inits_L,trace)
S3method(get_inits_MYZ,ENBRQ_dts)
S3method(get_inits_MYZ,Gtrace)
S3method(get_inits_MYZ,RM_dts)
S3method(get_inits_MYZ,RMlumpy)
S3method(get_inits_MYZ,Ztrace)
S3method(get_inits_MYZ,basicM_dts)
S3method(get_inits_X,SIP_dts)
S3method(get_inits_X,SIS_dts)
S3method(get_inits_X,trace)
S3method(list_Lvars,basic_dts)
S3method(list_Lvars,stages_dts)
S3method(list_MYZvars,ENBRQ_dts)
S3method(list_MYZvars,RM_dts)
S3method(list_MYZvars,RMlumpy)
S3method(list_MYZvars,basicM_dts)
S3method(list_Xvars,SIP_dts)
S3method(list_Xvars,SIS_dts)
S3method(make_TimeSpent,as_matrix)
S3method(make_TimeSpent,athome)
S3method(make_TimeSpent,xy)
S3method(make_calK,as_matrix)
S3method(make_calK,herethere)
S3method(make_calK,xy)
S3method(make_indices_L,basic_dts)
S3method(make_indices_L,stages_dts)
S3method(make_indices_L,trace)
S3method(make_indices_MYZ,ENBRQ_dts)
S3method(make_indices_MYZ,Gtrace)
S3method(make_indices_MYZ,RM_dts)
S3method(make_indices_MYZ,RMlumpy)
S3method(make_indices_MYZ,Ztrace)
S3method(make_indices_MYZ,basicM_dts)
S3method(make_indices_X,SIP_dts)
S3method(make_indices_X,SIS_dts)
S3method(make_indices_X,trace)
S3method(parse_dts_out_X,SIP_dts)
S3method(parse_dts_out_X,SIS_dts)
S3method(parse_dts_out_X,trace)
S3method(setup_EIP,fixed)
S3method(setup_EIP,null)
S3method(setup_Linits,basic_dts)
S3method(setup_Linits,stages_dts)
S3method(setup_Linits,trace)
S3method(setup_Lpar,basic_dts)
S3method(setup_Lpar,stages_dts)
S3method(setup_Lpar,trace)
S3method(setup_MYZinits,ENBRQ_dts)
S3method(setup_MYZinits,Gtrace)
S3method(setup_MYZinits,RM_dts)
S3method(setup_MYZinits,RMlumpy)
S3method(setup_MYZinits,Ztrace)
S3method(setup_MYZinits,basicM_dts)
S3method(setup_MYZpar,ENBRQ_dts)
S3method(setup_MYZpar,Gtrace)
S3method(setup_MYZpar,RM_dts)
S3method(setup_MYZpar,RMlumpy)
S3method(setup_MYZpar,Ztrace)
S3method(setup_MYZpar,basicM_dts)
S3method(setup_Xinits,SIP_dts)
S3method(setup_Xinits,SIS_dts)
S3method(setup_Xinits,trace)
S3method(setup_Xpar,SIP_dts)
S3method(setup_Xpar,SIS_dts)
S3method(setup_Xpar,trace)
S3method(setup_behavior,forced)
S3method(setup_behavior,null)
S3method(setup_control,forced)
S3method(setup_control,null)
S3method(travel_malaria,eir)
S3method(travel_malaria,foi)
S3method(travel_malaria,static)
S3method(update_inits_L,basic_dts)
S3method(update_inits_L,stages_dts)
S3method(update_inits_L,trace)
S3method(update_inits_MYZ,ENBRQ_dts)
S3method(update_inits_MYZ,Gtrace)
S3method(update_inits_MYZ,RM_dts)
S3method(update_inits_MYZ,RMlumpy)
S3method(update_inits_MYZ,Ztrace)
S3method(update_inits_MYZ,basicM_dts)
S3method(update_inits_X,SIP_dts)
S3method(update_inits_X,SIS_dts)
S3method(update_inits_X,trace)
export(Abiotic)
export(AreaSpray)
export(AreaSprayEffectSizes)
export(AreaSprayEffects)
export(AvailableBlood)
export(AvailableHabitat)
export(AvailableSugar)
export(BedNetEffectSizes)
export(BedNetEffects)
export(Behavior)
export(Bionomics)
export(Births)
export(CareSeeking)
export(Civil)
export(Clinic)
export(Control)
export(DTS_step)
export(DTS_step_aquatic)
export(DTS_step_cohort)
export(DTS_step_human)
export(DTS_step_mosy)
export(Development)
export(DistributeBedNets)
export(EIP)
export(EggLaying)
export(Emergence)
export(Exposure)
export(F_EIR)
export(F_H)
export(F_X)
export(F_alpha)
export(F_b)
export(F_beta)
export(F_eggs)
export(F_f)
export(F_foi)
export(F_fqM)
export(F_fqZ)
export(F_kappa)
export(F_nu)
export(F_p)
export(F_pr)
export(F_q)
export(F_sigma)
export(F_tau)
export(HTC)
export(HabitatDynamics)
export(Hydrology)
export(IRS_EffectSizes)
export(IRS_Effects)
export(LBionomics)
export(LSM_EffectSizes)
export(LSM_Effects)
export(LocalFrac)
export(MBionomics)
export(MassMedical)
export(OtherBloodHosts)
export(OviTraps)
export(OwnBedNet)
export(Rainfall)
export(Relative_Humidity)
export(Resources)
export(Shock)
export(SprayHouses)
export(SugarBaitEffectSizes)
export(SugarBaitEffects)
export(SugarBaits)
export(SugarDynamics)
export(Temperature)
export(Transmission)
export(TreatHabitats)
export(UseBedNet)
export(VectorControl)
export(VectorControlEffectSizes)
export(VectorControlEffects)
export(Visitors)
export(Weather)
export(approx_equal)
export(checkIt)
export(check_abiotic)
export(check_civil)
export(compute_AvailableHabitat)
export(compute_AvailableHosts)
export(compute_EIR)
export(compute_EIR_full)
export(compute_NI)
export(compute_NI_ix)
export(compute_beta)
export(compute_kappa)
export(compute_local_frac)
export(compute_terms)
export(compute_terms_steady)
export(compute_vars_aqua)
export(compute_vars_cohort)
export(compute_vars_full)
export(compute_vars_human)
export(compute_vars_mosy)
export(dHdt)
export(dLdt)
export(dMYZdt)
export(dXdt)
export(diag_inverse)
export(dts_last_to_inits)
export(dts_lines_EIR)
export(dts_lines_M)
export(dts_lines_PR)
export(dts_lines_X_SIP_dts)
export(dts_lines_X_SIS_dts)
export(dts_lines_YZ)
export(dts_lines_YZ_fracs)
export(dts_lines_Z_fracs)
export(dts_lines_aEIR)
export(dts_plot_EIR)
export(dts_plot_M)
export(dts_plot_PR)
export(dts_plot_X)
export(dts_plot_YZ)
export(dts_plot_YZ_fracs)
export(dts_plot_Z_fracs)
export(dts_plot_aEIR)
export(dts_setup)
export(dts_setup_aquatic)
export(dts_setup_cohort)
export(dts_setup_human)
export(dts_setup_mosy)
export(dts_solve)
export(dts_stable_orbit)
export(dts_steady)
export(get_inits)
export(get_inits_L)
export(get_inits_MYZ)
export(get_inits_X)
export(list_Lvars)
export(list_MYZvars)
export(list_Xvars)
export(make_Linits_basic_dts)
export(make_Linits_stages_dts)
export(make_Lpar_basic_dts)
export(make_Lpar_stages_dts)
export(make_Lpar_trace)
export(make_MYZinits_ENBRQ_dts)
export(make_MYZinits_RM_dts)
export(make_MYZinits_RMlumpy)
export(make_MYZinits_basicM_dts)
export(make_MYZpar_ENBRQ_dts)
export(make_MYZpar_Gtrace)
export(make_MYZpar_RM_dts)
export(make_MYZpar_RMlumpy)
export(make_MYZpar_Ztrace)
export(make_MYZpar_basicM_dts)
export(make_Omega)
export(make_TaR)
export(make_TimeSpent)
export(make_TimeSpent_athome)
export(make_TimeSpent_xy)
export(make_Xinits_SIP_dts)
export(make_Xinits_SIS_dts)
export(make_Xpar_SIP_dts)
export(make_Xpar_SIS_dts)
export(make_Xpar_trace)
export(make_calK)
export(make_calK_xy)
export(make_calN)
export(make_calU)
export(make_calU_s)
export(make_indices)
export(make_indices_L)
export(make_indices_MYZ)
export(make_indices_X)
export(make_inits_L_basic_dts)
export(make_inits_L_stages_dts)
export(make_inits_L_trace)
export(make_inits_MYZ_ENBRQ_dts)
export(make_inits_MYZ_Gtrace)
export(make_inits_MYZ_RM_dts)
export(make_inits_MYZ_RMlumpy)
export(make_inits_MYZ_Ztrace)
export(make_inits_MYZ_basicM_dts)
export(make_inits_X_SIP_dts)
export(make_inits_X_SIS_dts)
export(make_inits_X_trace)
export(make_parameters_L_basic_dts)
export(make_parameters_L_stages_dts)
export(make_parameters_L_trace)
export(make_parameters_MYZ_ENBRQ_dts)
export(make_parameters_MYZ_Gtrace)
export(make_parameters_MYZ_RM_dts)
export(make_parameters_MYZ_RMlumpy)
export(make_parameters_MYZ_Ztrace)
export(make_parameters_MYZ_basicM_dts)
export(make_parameters_X_SIP_dts)
export(make_parameters_X_SIS_dts)
export(make_parameters_X_trace)
export(make_parameters_demography_null)
export(make_parameters_dts)
export(metric_calD)
export(metric_calR)
export(metric_calV)
export(metric_calZ)
export(parse_dts_out)
export(parse_dts_out_L.basic_dts)
export(parse_dts_out_L.stages_dts)
export(parse_dts_out_L.trace)
export(parse_dts_out_MYZ.ENBRQ_dts)
export(parse_dts_out_MYZ.Gtrace)
export(parse_dts_out_MYZ.RM_dts)
export(parse_dts_out_MYZ.RMlumpy)
export(parse_dts_out_MYZ.Ztrace)
export(parse_dts_out_MYZ.basicM_dts)
export(parse_dts_out_X)
export(parse_dts_out_vec)
export(setup_BFpar_static)
export(setup_BloodFeeding)
export(setup_EGGpar_static)
export(setup_EIP)
export(setup_EggLaying_simple)
export(setup_EggLaying_static)
export(setup_Hpar_static)
export(setup_Linits)
export(setup_Lpar)
export(setup_MYZinits)
export(setup_MYZpar)
export(setup_Xinits)
export(setup_Xpar)
export(setup_abiotic_forced)
export(setup_abiotic_null)
export(setup_area_spray_null)
export(setup_behavior)
export(setup_behavior_forced)
export(setup_behavior_null)
export(setup_bionomics_static)
export(setup_care_seeking_null)
export(setup_civil_forced)
export(setup_civil_null)
export(setup_clinic_forced)
export(setup_clinic_null)
export(setup_control)
export(setup_control_forced)
export(setup_control_null)
export(setup_development_null)
export(setup_eip_fixed)
export(setup_eip_null)
export(setup_exposure_nb)
export(setup_exposure_pois)
export(setup_habitat_dynamics_static)
export(setup_hydrology_null)
export(setup_irs_null)
export(setup_itn_lemenach)
export(setup_itn_null)
export(setup_local_fraction_simple)
export(setup_lsm_null)
export(setup_mass_medical_forced)
export(setup_mass_medical_null)
export(setup_other_blood_hosts_static)
export(setup_ovitraps_null)
export(setup_rainfall_null)
export(setup_relative_humidity_null)
export(setup_resources_forced)
export(setup_resources_null)
export(setup_resources_static)
export(setup_shock_null)
export(setup_sugar_baits_null)
export(setup_sugar_static)
export(setup_temperature_null)
export(setup_travel_eir)
export(setup_travel_foi)
export(setup_travel_static)
export(setup_vc_control)
export(setup_vc_null)
export(setup_visitors_basic)
export(setup_visitors_static)
export(setup_weather_forced)
export(setup_weather_null)
export(shapeIt)
export(travel_malaria)
export(update_inits)
export(update_inits_L)
export(update_inits_MYZ)
export(update_inits_X)
importFrom(MASS,ginv)
importFrom(expm,expm)
importFrom(stats,pexp)
importFrom(utils,tail)