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NAMESPACE
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NAMESPACE
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useDynLib(Biobase, sublist_extract)
import(methods)
importFrom(BiocGenerics,
dims,
combine,
updateObject, updateObjectFromSlots, getObjectSlots,
annotation, "annotation<-"
)
importFrom(utils, head, tail, menu, packageDescription, read.table,
write.table, .DollarNames)
exportClasses(aggregator, container, eSet,
MIAxE, MIAME, characterORMIAME,
annotatedDataset, AssayData, data.frameOrNULL,
AnnotatedDataFrame,
Versions, VersionsNull, Versioned, VersionedBiobase,
ExpressionSet, MultiSet, SnpSet, NChannelSet,
ScalarObject, ScalarInteger, ScalarLogical, ScalarNumeric,
ScalarCharacter)
exportMethods("[", "[[", "$", abstract, aggenv, aggfun,
annotatedDataFrameFrom, annotation,
channel, channelNames, coerce,
combine, content, contents, description, dimnames, "dimnames<-",
dims, experimentData, expinfo, exprs,
featureNames, featureData, fData, fvarLabels, fvarMetadata,
hybridizations, initfun,
length, locked, makeDataPackage, normControls, notes, otherInfo,
pData,
phenoData, preproc, protocolData, sampleNames, samples, se.exprs,
selectChannels, snpCall, snpCallProbability, storageMode,
varLabels, varMetadata,
"annotation<-", "channelNames<-", "description<-", "dimLabels<-",
"experimentData<-", "exprs<-",
"featureNames<-", "featureData<-", "fData<-", "fvarLabels<-",
"fvarMetadata<-",
"notes<-", "preproc<-", "pData<-",
"phenoData<-", "protocolData<-", "sampleNames<-",
"snpCall<-", "snpCallProbability<-", "varLabels<-",
"varMetadata<-", "assayData<-", "se.exprs<-", "storageMode<-",
"write.exprs", dim, dimLabels, assayData,
pubMedIds, "pubMedIds<-",
isVersioned, isCurrent, classVersion, "classVersion<-",
updateObject, updateObjectTo,
initialize, show, Compare,
AnnotatedDataFrame,
ExpressionSet)
export(Aggregate, addVigs2WinMenu, anyMissing,
as.data.frame.ExpressionSet, assayDataNew,
assayDataValidMembers, assayDataElementNames, assayDataElement,
assayDataElementReplace, "assayDataElement<-", cache, copyEnv,
copySubstitute, createPackage, dumpPackTxt, esApply,
getPkgVigs, isUnique, listLen, matchpt, mkScalar, multiassign,
NChannelSet, note, openPDF,openVignette, package.version,
reverseSplit, rowMax, rowMedians, rowMin, rowQ,
readExpressionSet, read.AnnotatedDataFrame, read.MIAME, MIAME,
selectSome, strbreak, subListExtract, testBioCConnection,
lcSuffix, lcPrefix, lcPrefixC, updateOldESet, userQuery,
validMsg, write.AnnotatedDataFrame)
S3method(.DollarNames, "eSet")
S3method(.DollarNames, "ExpressionSet")
S3method(head, "AnnotatedDataFrame")
S3method(tail, "AnnotatedDataFrame")
S3method(as.data.frame, "ExpressionSet")