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GAMBIT is restricted to Chr1-22 #2

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CristiGuijarro opened this issue Dec 16, 2022 · 0 comments
Open

GAMBIT is restricted to Chr1-22 #2

CristiGuijarro opened this issue Dec 16, 2022 · 0 comments

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@CristiGuijarro
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GAMBIT/src/Main.cpp

Lines 196 to 198 in 1644b80

for(int i = 22; i>0; --i){
ldfile = gsubstr(ldfile, "chr" + to_string(i), "chr*");
}

Currently the LD References are restricted to chromsomes 1 - 22 and does not include the ability to provide X, Y or MT chromosomes. This would be a really handy feature to have when generating and providing alternative LD reference datasets, inclusive of other populations. Linked to #1 for limitations in LD reference data to use.

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