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nextflow hangs rather than exiting after workflow termination #62

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koadman opened this issue Nov 28, 2016 · 3 comments
Open

nextflow hangs rather than exiting after workflow termination #62

koadman opened this issue Nov 28, 2016 · 3 comments

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@koadman
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koadman commented Nov 28, 2016

Using vanilla nextflow 0.22.5 with any of the meta-sweeper workflows causes nextflow to simply hang at the end of the workflow, whether terminating cleanly or with error. A kill -9 is required to terminate the process.

@koadman
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koadman commented Nov 28, 2016

Note, this does not happen with non-MetaSweeper workflows

@cerebis
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cerebis commented Nov 29, 2016

Were there any exceptions during the run? I have noticed that if I try and interrupt a running workflow with NF0.22.5 that the system will not return to the CLI and as you mention, requires SIGKILL (9).

@koadman
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koadman commented Nov 29, 2016

hangs for me both with and without exceptions, while other (non-metasweeper) workflows exit cleanly on 0.22.5

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