Additional InferCNV Examples
Additional InferCNV examples can be found as indicated below:
- Glioblastoma derived from: Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. Science. 2014 Jun 20;344(6190):1396-401
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Melanoma derived from: Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. Science. 2016
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Oligodendroglioma derived from: Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma Nature, November 2016
Note, a small oligodendroglioma data set is included as the example data in the infercnv software.
- Pediatric midline gliomas derived from: Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. Science. 2018
See the corresponding run.R example scripts provided, and the expected output infercnv heatmaps provided as png files.