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Update Documentation #11

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WilliamIX opened this issue Apr 17, 2020 · 3 comments
Closed

Update Documentation #11

WilliamIX opened this issue Apr 17, 2020 · 3 comments
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@WilliamIX @ayush9pandey
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Analysis Features Helper functions for analyzing circuits (e.g. Sensitivity analysis) Bioscrape Core Issues pertaining to core bioscrape functionality documentation Software and example documentation enhancement New feature or request help wanted Extra attention is needed Lineages Issues pertaining to bioscrape lineages
Milestone
Bioscrape Release...

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@WilliamIX
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We need to keep the wiki up to date.

Documentation needed for:

  • SBML usage

  • Lineages

  • Different simulator types

  • Parameter Identification

  • Developer Guide [how all the parts flow together]
@WilliamIX WilliamIX added enhancement New feature or request help wanted Extra attention is needed documentation Software and example documentation Bioscrape Core Issues pertaining to core bioscrape functionality Lineages Issues pertaining to bioscrape lineages Inference Issues Pertaining to Bioscrape Inference, Parameter Identificaiton, and System Identification Analysis Features Helper functions for analyzing circuits (e.g. Sensitivity analysis) labels Apr 17, 2020
@WilliamIX WilliamIX mentioned this issue Apr 17, 2020
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@WilliamIX
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@ayush9pandey I just ported over the old bioscrape wiki except for the parameter inference part which is clearly dated compared to all your new examples - currently I just pointed people to the examples folder but has no other information. At some point, could you add some pointers to which notebooks to look at for what?

@ayush9pandey
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Thanks! Updated the wiki for inference as well.

@ayush9pandey ayush9pandey removed the Inference Issues Pertaining to Bioscrape Inference, Parameter Identificaiton, and System Identification label Jun 15, 2020
@ayush9pandey ayush9pandey mentioned this issue Nov 22, 2022
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@ayush9pandey
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The wiki is in much better shape now. I edited all pages, added examples, a new README..so I consider this issue resolved for now. Obviously, we need to keep improving the documentation!

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@WilliamIX WilliamIX

@ayush9pandey ayush9pandey

Labels
Analysis Features Helper functions for analyzing circuits (e.g. Sensitivity analysis) Bioscrape Core Issues pertaining to core bioscrape functionality documentation Software and example documentation enhancement New feature or request help wanted Extra attention is needed Lineages Issues pertaining to bioscrape lineages
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Bioscrape Release Summer 2022
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@WilliamIX @ayush9pandey