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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools>=64", "Cython", "numpy", "wheel"]
build-backend = "setuptools.build_meta"
[tool.distutils.bdist_wheel]
universal = true
[project]
name = "Bioscrape"
version = "1.3.0"
description = "Biological Stochastic Simulation of Single Cell Reactions and Parameter Estimation"
authors = [{name='Ayush Pandey'},
{name='William Poole'},
{name='Anandh Swaminathan'},
{name='Richard M Murray'}]
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Programming Language :: Cython',
'Programming Language :: Python',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Topic :: Software Development',
'Topic :: Scientific/Engineering',
'Operating System :: OS Independent',
]
license = {file = "LICENSE"}
readme = "README.md"
keywords=["SBML", "synthetic biology", "modeling",
"Chemical Reaction Network", "CRN simulator", "stochastic",
"parameter inference"]
dependencies = [
"numpy",
"matplotlib",
"pytest",
"scipy",
"cython",
"python-libsbml",
"beautifulsoup4",
"sympy",
"emcee",
"pandas",
"corner",
"lmfit"
]
requires-python = ">=3.7"
[project.optional-dependencies]
test = [
"pytest",
]
[project.urls]
"Homepage" = "https://github.com/biocircuits/bioscrape/"
"Bug Tracker" = "https://github.com/biocircuits/bioscrape/issues"
[tool.setuptools]
packages = ["bioscrape"]
include-package-data = true
package-dir = {"bioscrape"="bioscrape"}
[tool.setuptools.exclude-package-data]
"*" = ["*.c", "*.h"]