CHANGELOG.md

CNVetti CHANGELOG

HEAD (v0.1.0; unreleased)

• Adding cnvetti visualize sub commands:
  • cov-to-igv (extract coverage from BCF to IGV format).
• Adding cnvetti quick sub commands:
  • wis-build-model (build model for within-sample CNV calling from BAM files)
  • wis-call (within-sample CNV calling from BAM and model BCF file)
• Adding cnvetti cmd sub commands:
  • coverage (genome-wide fragments/coverage, or target-wise fragments)
  • normalize (normalize with total coverage or by GC-wise median)
  • merge-cov (merge coverage BCF files)
  • build-model-wis (build model for the within-sample CNV calling approach)
  • mod-cov (compute model-based coverage)
• Starting out with CLI skelleton for cnvetti cmd *.