{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":424356374,"defaultBranch":"master","name":"arete","ownerLogin":"beiko-lab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-11-03T19:35:19.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/3899409?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1721923524.0","currentOid":""},"activityList":{"items":[{"before":"f99fbbc5d73faf1dc87af842a6a53ae874d68141","after":"2b005759dd64c8eac4492cb9e17e309d3fab60f1","ref":"refs/heads/gh-pages","pushedAt":"2024-08-08T12:31:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed 3ed26f9 with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed 3ed26f9 with MkDocs version: 1.6.0"}},{"before":"c44b00c9f8c40b53031b3c23876a3e609d66a2ac","after":"3ed26f9365adb0141ab30d3567297fb19c5d4f1c","ref":"refs/heads/master","pushedAt":"2024-08-08T12:31:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"hotfix: Remove extra parens in ppanggolin version","shortMessageHtmlLink":"hotfix: Remove extra parens in ppanggolin version"}},{"before":"17f66eef69841508bf8e68632f7bb0e83a04cb5d","after":"f99fbbc5d73faf1dc87af842a6a53ae874d68141","ref":"refs/heads/gh-pages","pushedAt":"2024-08-08T12:13:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed c44b00c with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed c44b00c with MkDocs version: 1.6.0"}},{"before":"9c16708f5db57c3478e1487d9b6b29bc47804af6","after":"c44b00c9f8c40b53031b3c23876a3e609d66a2ac","ref":"refs/heads/master","pushedAt":"2024-08-08T12:12:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"hotfix: Capture only first version in gene_fasttree","shortMessageHtmlLink":"hotfix: Capture only first version in gene_fasttree"}},{"before":"5563de7f12762694948b1ee2d21d047b84e17285","after":"17f66eef69841508bf8e68632f7bb0e83a04cb5d","ref":"refs/heads/gh-pages","pushedAt":"2024-07-25T16:05:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed 9c16708 with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed 9c16708 with MkDocs version: 1.6.0"}},{"before":"4419e4ad25a6ae3afd146fb6da4d5a83d3962eb3","after":null,"ref":"refs/heads/add-build-upset","pushedAt":"2024-07-25T16:05:24.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"}},{"before":"5d1250e318f29835f17e169ae581ff8e746366d2","after":"9c16708f5db57c3478e1487d9b6b29bc47804af6","ref":"refs/heads/master","pushedAt":"2024-07-25T16:05:21.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"feat: Add Build_Upset module (#204)\n\n* feat: Add module for Build_Upset.py script\r\n\r\n* refact: Change genome to genome_id\r\n\r\n* feat: Add build upset to annotation subwf\r\n\r\n* docs: Update param docs\r\n\r\n* docs: Update schema and param docs\r\n\r\n* feat: Add dummy groups to test_full table","shortMessageHtmlLink":"feat: Add Build_Upset module (#204)"}},{"before":"0e23b1058a10a2da9be854ad9d5b7d3e8b7b9e59","after":"4419e4ad25a6ae3afd146fb6da4d5a83d3962eb3","ref":"refs/heads/add-build-upset","pushedAt":"2024-07-25T11:58:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"feat: Add dummy groups to test_full table","shortMessageHtmlLink":"feat: Add dummy groups to test_full table"}},{"before":"a43821a6ce45bae2fe8c2b7847e392d4e552820a","after":"0e23b1058a10a2da9be854ad9d5b7d3e8b7b9e59","ref":"refs/heads/add-build-upset","pushedAt":"2024-07-25T11:56:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"docs: Update schema and param docs","shortMessageHtmlLink":"docs: Update schema and param docs"}},{"before":"1964e89f61f9c58c789ad87d4fd9bea1473915ec","after":"a43821a6ce45bae2fe8c2b7847e392d4e552820a","ref":"refs/heads/add-build-upset","pushedAt":"2024-07-24T23:45:46.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"docs: Update param docs","shortMessageHtmlLink":"docs: Update param docs"}},{"before":null,"after":"1964e89f61f9c58c789ad87d4fd9bea1473915ec","ref":"refs/heads/add-build-upset","pushedAt":"2024-07-24T18:44:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"feat: Add module for Build_Upset.py script","shortMessageHtmlLink":"feat: Add module for Build_Upset.py script"}},{"before":"b2a7f82c89bc2a77ef05e6d55c5681042b5a4f5b","after":"5563de7f12762694948b1ee2d21d047b84e17285","ref":"refs/heads/gh-pages","pushedAt":"2024-07-23T13:04:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed 5d1250e with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed 5d1250e with MkDocs version: 1.6.0"}},{"before":"65d4eff2d8607340ade79c7ca79f8a247d463fe4","after":null,"ref":"refs/heads/add-feature-dispersion","pushedAt":"2024-07-23T13:03:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"}},{"before":"a54d8a17ef95b62879ea4e31f1636f3295ebe391","after":"5d1250e318f29835f17e169ae581ff8e746366d2","ref":"refs/heads/master","pushedAt":"2024-07-23T13:03:40.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"feat: Add feature dispersion script (#203)\n\n* feat: Add feature dispersion script and module\r\n\r\n* fix: Add missing output base to script\r\n\r\n* feat: Integrate feat dispersion into the pipeline\r\n\r\n* refact: Change genome to genome_id\r\n\r\n* refact: Add ability to read from samplesheet\r\n\r\n* docs: Update param docs\r\n\r\n* refact: Change output dir\r\n\r\n* fix: Improve check when there is no profile\r\n\r\n* tests: Add extra input to phylo test","shortMessageHtmlLink":"feat: Add feature dispersion script (#203)"}},{"before":"939a089ea921a35ad6409a0c69884d4d93b7c5a0","after":"65d4eff2d8607340ade79c7ca79f8a247d463fe4","ref":"refs/heads/add-feature-dispersion","pushedAt":"2024-07-23T12:31:33.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"tests: Add extra input to phylo test","shortMessageHtmlLink":"tests: Add extra input to phylo test"}},{"before":"3f22a8bcf3334cbbf200108f2dd953b739939ea5","after":"939a089ea921a35ad6409a0c69884d4d93b7c5a0","ref":"refs/heads/add-feature-dispersion","pushedAt":"2024-07-22T20:24:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"refact: Change output dir","shortMessageHtmlLink":"refact: Change output dir"}},{"before":null,"after":"3f22a8bcf3334cbbf200108f2dd953b739939ea5","ref":"refs/heads/add-feature-dispersion","pushedAt":"2024-07-22T20:23:54.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"docs: Update param docs","shortMessageHtmlLink":"docs: Update param docs"}},{"before":"501745ba82ccfa75dff6d53bdaf322a112d75498","after":"b2a7f82c89bc2a77ef05e6d55c5681042b5a4f5b","ref":"refs/heads/gh-pages","pushedAt":"2024-07-22T14:33:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed a54d8a1 with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed a54d8a1 with MkDocs version: 1.6.0"}},{"before":"3e5effcad17f6a14df010576b41b0691b7d71f0d","after":null,"ref":"refs/heads/mobsuite-report-strategy","pushedAt":"2024-07-22T14:33:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"}},{"before":"c9eeaca4a5b9526470d17277dfdd9f1cee70fe38","after":"a54d8a17ef95b62879ea4e31f1636f3295ebe391","ref":"refs/heads/master","pushedAt":"2024-07-22T14:32:50.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"refact: Add alternative strategy for merging mobsuite results (#202)","shortMessageHtmlLink":"refact: Add alternative strategy for merging mobsuite results (#202)"}},{"before":null,"after":"3e5effcad17f6a14df010576b41b0691b7d71f0d","ref":"refs/heads/mobsuite-report-strategy","pushedAt":"2024-07-22T14:14:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"refact: Add alternative strategy for merging mobsuite results","shortMessageHtmlLink":"refact: Add alternative strategy for merging mobsuite results"}},{"before":"e64c9a5deff0c59fac0084760bbc43894815ee85","after":"501745ba82ccfa75dff6d53bdaf322a112d75498","ref":"refs/heads/gh-pages","pushedAt":"2024-07-22T14:11:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed c9eeaca with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed c9eeaca with MkDocs version: 1.6.0"}},{"before":"d71fc8b7e58e0b6409fc5a0745464fb41288d84d","after":"c9eeaca4a5b9526470d17277dfdd9f1cee70fe38","ref":"refs/heads/master","pushedAt":"2024-07-22T14:11:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"chore: Update hash for baktadbdownload","shortMessageHtmlLink":"chore: Update hash for baktadbdownload"}},{"before":"7880ca83100160c8c26da2178fb912315c0db425","after":"e64c9a5deff0c59fac0084760bbc43894815ee85","ref":"refs/heads/gh-pages","pushedAt":"2024-07-22T13:57:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed d71fc8b with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed d71fc8b with MkDocs version: 1.6.0"}},{"before":"370843b57d8c26a11e82d67bb86bf12833ac3f65","after":"d71fc8b7e58e0b6409fc5a0745464fb41288d84d","ref":"refs/heads/master","pushedAt":"2024-07-22T13:57:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"chore: Update bakta db download version","shortMessageHtmlLink":"chore: Update bakta db download version"}},{"before":"33e96148690569287e2d70c902b6b14d33c4ddc8","after":"7880ca83100160c8c26da2178fb912315c0db425","ref":"refs/heads/gh-pages","pushedAt":"2024-07-04T13:30:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed 370843b with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed 370843b with MkDocs version: 1.6.0"}},{"before":"e5dbb4ec27d5fc3167d3465aca3c5420ae96bd2d","after":"370843b57d8c26a11e82d67bb86bf12833ac3f65","ref":"refs/heads/master","pushedAt":"2024-07-04T13:29:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"fix: Change db name in cazy filter matches\n\n- So it maches the actual filenames and merging doesn't fail when\n creating the annotation report and profile","shortMessageHtmlLink":"fix: Change db name in cazy filter matches"}},{"before":"9bb02845fde558ff9e1be2bef31c65f074642c60","after":"33e96148690569287e2d70c902b6b14d33c4ddc8","ref":"refs/heads/gh-pages","pushedAt":"2024-06-28T11:12:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deployed e5dbb4e with MkDocs version: 1.6.0","shortMessageHtmlLink":"Deployed e5dbb4e with MkDocs version: 1.6.0"}},{"before":"6c2aa5a77e17e53ee97c714881559ffd86e895d9","after":null,"ref":"refs/heads/update-iqtree-params","pushedAt":"2024-06-28T11:12:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"}},{"before":"3758bb79faf143c272d50ddc0a9047d9c5d844a9","after":"e5dbb4ec27d5fc3167d3465aca3c5420ae96bd2d","ref":"refs/heads/master","pushedAt":"2024-06-28T11:12:05.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jvfe","name":"João Cavalcante","path":"/jvfe","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43506501?s=80&v=4"},"commit":{"message":"refact: Add performance parameters to iqtree (#199)\n\n* refact: Add performance parameters to iqtree\r\n\r\n* fix: Remove +ASC","shortMessageHtmlLink":"refact: Add performance parameters to iqtree (#199)"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0wOFQxMjozMTo1Ni4wMDAwMDBazwAAAASVOtEV","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNi0yOFQxMToxMjowNS4wMDAwMDBazwAAAARxxyLf"}},"title":"Activity · beiko-lab/arete"}