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build.gradle
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build.gradle
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apply plugin: 'groovy'
apply plugin: 'application'
apply plugin: 'maven'
sourceCompatibility = 8
targetCompatibility = 8
group = 'com.antigenomics'
version = '1.3.1'
mainClassName = 'com.antigenomics.vdjdb.Main'
repositories {
mavenCentral()
maven { url 'https://jitpack.io' }
}
jar {
baseName = 'vdjmatch'
version = "$version"
manifest {
attributes("Main-Class": "$mainClassName", "Implementation-Version": version)
}
from {
configurations.compile.collect { it.isDirectory() ? it : zipTree(it) }
}
}
sourceSets {
main {
java { srcDirs = [] } // no source dirs for the java compiler
groovy { srcDirs = ["src/main/java", "src/main/groovy"] } // compile everything in src/ with groovy
}
test {
java { srcDirs = [] } // no source dirs for the java compiler
groovy { srcDirs = ["src/test/java", "src/test/groovy"] } // compile everything in src/ with groovy
}
}
sourceSets {
test {
resources {
srcDir 'src/test/resources/'
}
}
build {
resources {
srcDir 'src/test/resources/'
}
}
}
dependencies {
compile 'org.codehaus.groovy:groovy-all:2.5.2'
compile 'org.codehaus.gpars:gpars:1.2.1'
compile 'junit:junit:4.12'
compile 'com.github.mikessh:vdjtools:1.2.1'
compile 'com.milaboratory:milib:1.8.3'
compile 'com.fasterxml.jackson.core:jackson-core:2.7.1'
compile 'org.apache.ant:ant:1.9.4'
compile 'com.github.haifengl:smile-core:1.5.1'
}