ChocoPhlAn and UniRef databases for HUMAnN

[diptarajchaudhari]

Hi..
For the higher version i.e. YAMP v0.9.5+ docker is not needed. I don't use docker and ChocoPhlAn and UniRef databases for HUMAnN are available for download using docker. these files are not available in zonedo. Please help me with this.

[diptarajchaudhari]

Hi, I have downloaded the chocophlan and uniref databases from using humann_databases command
I am getting this error now

Error executing process > 'get_software_versions'
Caused by:
Process get_software_versions terminated with an error exit status (127)
Command executed:
echo 0.9.5.3 > v_pipeline.txt
echo 21.10.6 > v_nextflow.txt
echo quay.io/biocontainers/fastqc:0.11.9--0 | cut -d: -f 2 > v_fastqc.txt
echo quay.io/biocontainers/bbmap:38.87--h1296035_0 | cut -d: -f 2 > v_bbmap.txt
metaphlan --version > v_metaphlan.txt
humann --version > v_humann.txt
echo qiime2/core:2020.8 | cut -d: -f 2 > v_qiime.txt
echo quay.io/biocontainers/multiqc:1.9--py_1 | cut -d: -f 2 > v_multiqc.txt
scrape_software_versions.py > software_versions_mqc.yaml
Command exit status:
127

Command output:
(empty)
Command error:
.command.sh: line 9: humann: command not found
Work dir:

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named .command.sh

[alesssia]

Hello @diptarajchaudhari,

which command generated this error? Are you using Docker or Singularity? Or do you have all the pieces of software available in your path? Which version of humann are you using and how was installed?