no error report but hic maps of some chromosomes are empty

[jimie0311]

Hello,
I used hicplotter to show the hic maps in 50K solution.
The command is as below
python HiCPlotter.py -f ./hicpro_output/hic_results/matrix/scaffolds30/iced/150000/scaffolds30_150000_iced.matrix -o chr01 -r 150000 -tri 1 -bed ./hicpro_output/hic_results/matrix/scaffolds30/raw/150000/scaffolds30_150000_abs.bed -n chr01 -chr chr01

no error was reported. However, the hic maps (.png) were obtained for most chromosomes except a few empty plots. And after reversing some mis-joins, I rerun hicplotter. Some chromosomes without changes showing normal hic maps in the last run became empty in the second run.

Has anyone met this before? Where is the problem? Thanks.

Junmin