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some question when comparing two matrix #34

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mickish6002 opened this issue Jan 16, 2019 · 1 comment
Open

some question when comparing two matrix #34

mickish6002 opened this issue Jan 16, 2019 · 1 comment

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@mickish6002
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Hi, Professor,
When I try to compare two matrix and get the differential heatmap, I get stuck in the -c parameter.
python ~data/scripts/hic/HiCPlotter.py -f PA_40000_iced.matrix late_40000_iced.matrix -n PA late -chr chr6 -r 40000 -o comparison -s 1225 -e 1375 -c 1 -spi 1 -hmc 1

usage: HiCPlotter.py -f file1 file2 ... -n name1 name2 ... -chr chr12 -o hES
HiCPlotter.py: error: ambiguous option: -c could match -chr, -cn

How can I solve this problem, any suggestion is welcomed.
@akdemirlab
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Hi,
You can use "--compare 1" instead of "-c 1" to prevent the error.

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@akdemirlab @mickish6002