is full snakemake required? or would snakemake-minimal suffice?

[ctb]

I noticed in your environment.yml file you install snakemake - curious about whether you need full snakemake or if snakemake-minimal would be sufficient. The advantage is that minimal is much smaller!

[akcorut]

Hi @ctb,

Sorry for my late reply. I was away the last couple of weeks and finally had time to go through the issues and test snakemake-minimal. First of all, thank you for the suggestion. Currently, the workflow seems to be working using snakemake-minimal without any problem. I have changed the environment.yaml with the commit 8f85998. I will run a couple more tests with snakemake-minimal before updating the conda version.

Best,
Kivanc

[ctb]

awesome, thanks for getting back to me!