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mask_epi_anat.sub-002+tlrc.HEAD
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mask_epi_anat.sub-002+tlrc.HEAD
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'[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] ===================================\n[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] === History of inputs to 3dcalc ===\n[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] === Input a:\n[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] [ptaylor@Valta-X3: Wed Mar 20 11:25:23 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dTcat -prefix sub-002.results/pb00.sub-002.r01.tcat '/data/PROJECTS/draft_apqc/data_proc_example/sub-002/func/sub-002_task-avrel_run-1_bold.nii.gz[2..$]'\n[ptaylor@Valta-X3: Wed Mar 20 11:27:53 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dTshift -tzero 0 -quintic -prefix pb01.sub-002.r01.tshift pb00.sub-002.r01.tcat+orig\n[ptaylor@Valta-X3: Wed Mar 20 11:34:45 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dNwarpApply -master anatQQ.sub-002+tlrc -dxyz 2.5 -source pb01.sub-002.r01.tshift+orig -nwarp 'anatQQ.sub-002_WARP.nii mat.r01.warp.aff12.1D' -prefix rm.epi.nomask.r01\n[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] === Input b:\n[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] [ptaylor@Valta-X3: Wed Mar 20 11:25:23 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dTcat -prefix sub-002.results/pb00.sub-002.r01.tcat '/data/PROJECTS/draft_apqc/data_proc_example/sub-002/func/sub-002_task-avrel_run-1_bold.nii.gz[2..$]'\n[ptaylor@Valta-X3: Wed Mar 20 11:27:53 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dTshift -tzero 0 -quintic -prefix pb01.sub-002.r01.tshift pb00.sub-002.r01.tcat+orig\n[ptaylor@Valta-X3: Wed Mar 20 11:31:30 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dcalc -a pb01.sub-002.r01.tshift+orig -expr 1 -prefix rm.epi.all1\n[ptaylor@Valta-X3: Wed Mar 20 11:36:50 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dNwarpApply -master anatQQ.sub-002+tlrc -dxyz 2.5 -source rm.epi.all1+orig -nwarp 'anatQQ.sub-002_WARP.nii mat.r01.warp.aff12.1D' -interp cubic -ainterp NN -quiet -prefix rm.epi.1.r01\n[ptaylor@Valta-X3: Wed Mar 20 11:36:53 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dTstat -min -prefix rm.epi.min.r01 rm.epi.1.r01+tlrc\n[ptaylor@Valta-X3: Wed Mar 20 11:47:53 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dMean -datum short -prefix rm.epi.mean rm.epi.min.r01+tlrc.HEAD rm.epi.min.r02+tlrc.HEAD rm.epi.min.r03+tlrc.HEAD\n[ptaylor@Valta-X3: Wed Mar 20 11:47:53 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dcalc -a rm.epi.mean+tlrc -expr 'step(a-0.999)' -prefix mask_epi_extents\n[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] ===================================\n[ptaylor@Valta-X3: Wed Mar 20 11:47:55 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dcalc -a rm.epi.nomask.r01+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.sub-002.r01.volreg\n[ptaylor@Valta-X3: Wed Mar 20 11:51:23 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.sub-002.r01.blur pb02.sub-002.r01.volreg+tlrc\n[ptaylor@Valta-X3: Wed Mar 20 11:51:51 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dAutomask -prefix rm.mask_r01 pb03.sub-002.r01.blur+tlrc\n[ptaylor@Valta-X3: Wed Mar 20 11:51:57 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dmask_tool -inputs rm.mask_r01+tlrc.HEAD rm.mask_r02+tlrc.HEAD rm.mask_r03+tlrc.HEAD -union -prefix full_mask.sub-002\n[ptaylor@Valta-X3: Wed Mar 20 11:51:57 2024] {AFNI_24.0.13:linux_ubuntu_16_64_glw_local_shared} 3dmask_tool -input full_mask.sub-002+tlrc mask_anat.sub-002+tlrc -inter -prefix mask_epi_anat.sub-002~
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