ProtoCell4P: An Explainable Prototype-based Neural Network for Patient Classification Using Single-cell RNA-seq
This repo contains the source code for our manuscript to Bioinformatics.
- Change directory to
./data/lupus
- Follow the instruction of
./data/lupus/download.txt
- Change directory to
./data/cardio
- Follow the instruction of
./data/cardio/download.txt
- Change directory to
./data/covid
- Follow the instruction of
./data/covid/download.txt
- Change directory to
./src
- Run
sh run.sh
- Run
sh run_base.sh
- Run
sh run_ablation.sh
If you find our research useful, please consider citing:
@article{xiong2023protocell4p,
title={ProtoCell4P: an explainable prototype-based neural network for patient classification using single-cell RNA-seq},
author={Xiong, Guangzhi and Bekiranov, Stefan and Zhang, Aidong},
journal={Bioinformatics},
volume={39},
number={8},
pages={btad493},
year={2023},
publisher={Oxford University Press}
}