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.vimproject
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ExTRI=/$PWD filter="*.rb *.R *.js *.sass *.haml *.tsv" {
README.md
workflow.rb
bin=bin{
add_small_scale_experiment.rb
count_evidence.py
}
doc=doc filter="*"{
Treminer.txt
ToDo.txt
}
lib=lib {
sinatra.rb
sources=rbbt/sources{
ExTRI.rb
GOA.rb
HTRI.rb
Intact.rb
TFCheckpoint.rb
TFClass.rb
TRRUST.rb
GEREDB.rb
CytReg.rb
Pavlidis.rb
Dorothea.rb
}
knowledge_base=rbbt/knowledge_base{
ExTRI.rb
}
tasks=rbbt/tasks/ExTRI{
clean.rb
validation_samples.rb
validation.rb
validation_evaluation.rb
database_coverage.rb
ner.rb
regulon.rb
statistics.rb
year.rb
psicquic.rb
biogateway.rb
greco.rb
tf_tf.rb
plots.rb
adhoc.rb
manuscript.rb
rename.rb
}
}
data=data filter="*"{
Catalogues_2012-08-09_UTF8.txt
Encode
ExTRI_curated.tsv
GOA
GREEKC_dbTF_QuickGO_catalogue.txt
NTNU_invalid
TFClass.json
TFs_compExTRI_categorized_260122.tsv
hdacs.list
hdacs_etc.list
pmids2year_all.txt
post_process_rules.tsv
post_process_rules-2.tsv
post_process_rules-3.tsv
post_process_rules-4.tsv
post_process_rules-5.tsv
post_process_rules-6.tsv
post_process_rules-7.tsv
signal_transd.list
TFclass_extended=TFclass_extended{
Include_non_TFClass_300317.tsv
salvage
}
Astrid Validation="Astrid Validation"{
Consensus_280717_extended_data_v3.xlsx - consensus.tsv
explanation.tsv
validation_384_high-confidence_ExTRI_July_2017.xlsx - validation_July_2017.tsv
validation_sample_lowscore_290317.tsv
validation_sample_pmids_280317_AL_124-labels.tsv
validation_samples_260317.tsv
}
}
share=share filter="*"{
rbbt_commands=rbbt_commands{
bootstrap
}
databases=databases{
ExTRI=ExTRI{
Encode
GOA
HTRIDB.gz
HTRIDB_HT_methods
Intact
TF.gz
TFACTS
TF_full.gz
TFacts_flagged_articles
Thomas2015
Nov2017_update=Nov2017_update{
Intact
Thomas2015
}
}
}
}
www=www {
views=views{
main=main{
curation.haml
}
ExTRI=ExTRI{
venn=venn{
job_result.haml
}
sunburst=sunburst{
job_result.haml
}
top=top{
job_result.haml
}
}
entity=entity{
PMID.haml
}
}
}
}