diff --git a/OMOP/load_stage.sql b/OMOP/load_stage.sql new file mode 100644 index 000000000..480ddf3ea --- /dev/null +++ b/OMOP/load_stage.sql @@ -0,0 +1,53 @@ +/************************************************************************** +* Copyright 2016 Observational Health Data Sciences and Informatics (OHDSI) +* +* Licensed under the Apache License, Version 2.0 (the "License"); +* you may not use this file except in compliance with the License. +* You may obtain a copy of the License at +* +* http://www.apache.org/licenses/LICENSE-2.0 +* +* Unless required by applicable law or agreed to in writing, software +* distributed under the License is distributed on an "AS IS" BASIS, +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +* See the License for the specific language governing permissions and +* limitations under the License. +* +* Authors: Medical team +* Date: 2021 +**************************************************************************/ + +DO $_$ +BEGIN + PERFORM VOCABULARY_PACK.SetLatestUpdate( + pVocabularyName =>'Type Concept', + pVocabularyDate => CURRENT_DATE, + pVocabularyVersion => 'Type Concept '||TO_CHAR(CURRENT_DATE,'YYYYMMDD'), + pVocabularyDevSchema => 'DEV_OMOP' +); +END $_$; + +-- 2. Truncate all working tables +TRUNCATE TABLE concept_stage; +TRUNCATE TABLE concept_relationship_stage; +TRUNCATE TABLE concept_synonym_stage; +TRUNCATE TABLE pack_content_stage; +TRUNCATE TABLE drug_strength_stage; + +--3. Manual concepts +DO $_$ +BEGIN + PERFORM VOCABULARY_PACK.ProcessManualConcepts(); +END $_$; + +--4. Manual mappings +DO $_$ +BEGIN + PERFORM VOCABULARY_PACK.ProcessManualRelationships(); +END $_$; + +--5. Manual synonyms +DO $_$ +BEGIN + PERFORM VOCABULARY_PACK.ProcessManualSynonyms(); +END $_$;