diff --git a/DESCRIPTION b/DESCRIPTION
index 396ceba..9cd5f97 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,8 +1,8 @@
Package: FeatureExtraction
Type: Package
Title: Generating Features for a Cohort
-Version: 3.3.1
-Date: 2023-09-25
+Version: 3.3.2
+Date: 2023-11-20
Authors@R: c(
person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut")),
person("Marc", "Suchard", role = c("aut")),
diff --git a/NEWS.md b/NEWS.md
index 2d82462..22ee2b8 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,10 @@
+FeatureExtraction 3.3.2
+=======================
+
+Bug Fixes:
+
+- Fixes R check on GitHub Actions (#211)
+
FeatureExtraction 3.3.1
=======================
diff --git a/R/Table1.R b/R/Table1.R
index 3be7695..c0252a6 100644
--- a/R/Table1.R
+++ b/R/Table1.R
@@ -31,6 +31,8 @@
#' @export
getDefaultTable1Specifications <- function() {
fileName <- system.file("csv", "Table1Specs.csv", package = "FeatureExtraction")
+ # Workaround for issue https://github.com/tidyverse/vroom/issues/519:
+ readr::local_edition(1)
colTypes <- list(label = readr::col_character(), analysisId = readr::col_integer(), covariateIds = readr::col_character())
specifications <- readr::read_csv(fileName, col_types = colTypes)
return(specifications)
diff --git a/docs/404.html b/docs/404.html
index eb1590e..9c4c58d 100644
--- a/docs/404.html
+++ b/docs/404.html
@@ -32,7 +32,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html b/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html
index 30dd20c..b5e0afe 100644
--- a/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html
+++ b/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html
@@ -33,7 +33,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -100,7 +100,7 @@
Creating covariates based on other cohorts
Martijn J.
Schuemie
- 2023-09-25
+ 2023-11-20
Source: vignettes/CreatingCovariatesBasedOnOtherCohorts.Rmd
CreatingCovariatesBasedOnOtherCohorts.Rmd
diff --git a/docs/articles/CreatingCovariatesUsingCohortAttributes.html b/docs/articles/CreatingCovariatesUsingCohortAttributes.html
index 16337d4..d4ec41f 100644
--- a/docs/articles/CreatingCovariatesUsingCohortAttributes.html
+++ b/docs/articles/CreatingCovariatesUsingCohortAttributes.html
@@ -33,7 +33,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -100,7 +100,7 @@ Creating covariates using cohort attributes
Martijn J.
Schuemie
- 2023-09-25
+ 2023-11-20
Source: vignettes/CreatingCovariatesUsingCohortAttributes.Rmd
CreatingCovariatesUsingCohortAttributes.Rmd
diff --git a/docs/articles/CreatingCustomCovariateBuilders.html b/docs/articles/CreatingCustomCovariateBuilders.html
index ec200b3..c899d41 100644
--- a/docs/articles/CreatingCustomCovariateBuilders.html
+++ b/docs/articles/CreatingCustomCovariateBuilders.html
@@ -33,7 +33,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -100,7 +100,7 @@ Creating custom covariate builders
Martijn J.
Schuemie
- 2023-09-25
+ 2023-11-20
Source: vignettes/CreatingCustomCovariateBuilders.Rmd
CreatingCustomCovariateBuilders.Rmd
diff --git a/docs/articles/CreatingCustomCovariateBuildersKorean.html b/docs/articles/CreatingCustomCovariateBuildersKorean.html
index fab985e..e592265 100644
--- a/docs/articles/CreatingCustomCovariateBuildersKorean.html
+++ b/docs/articles/CreatingCustomCovariateBuildersKorean.html
@@ -33,7 +33,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -100,7 +100,7 @@ Creating custom covariate builders (Korean)
Jeon Ga Bin
& Martijn J. Schuemie
- 2023-09-25
+ 2023-11-20
Source: vignettes/CreatingCustomCovariateBuildersKorean.Rmd
CreatingCustomCovariateBuildersKorean.Rmd
diff --git a/docs/articles/UsingFeatureExtraction.html b/docs/articles/UsingFeatureExtraction.html
index a8f6202..89982f6 100644
--- a/docs/articles/UsingFeatureExtraction.html
+++ b/docs/articles/UsingFeatureExtraction.html
@@ -33,7 +33,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -100,7 +100,7 @@ Using FeatureExtraction
Martijn J.
Schuemie
- 2023-09-25
+ 2023-11-20
Source: vignettes/UsingFeatureExtraction.Rmd
UsingFeatureExtraction.Rmd
diff --git a/docs/articles/UsingFeatureExtractionKorean.html b/docs/articles/UsingFeatureExtractionKorean.html
index 4a031c8..e059f91 100644
--- a/docs/articles/UsingFeatureExtractionKorean.html
+++ b/docs/articles/UsingFeatureExtractionKorean.html
@@ -33,7 +33,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -100,7 +100,7 @@ Using FeatureExtraction (Korean)
Jeon Ga Bin
& Martijn J. Schuemie
- 2023-09-25
+ 2023-11-20
Source: vignettes/UsingFeatureExtractionKorean.Rmd
UsingFeatureExtractionKorean.Rmd
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 556e1d6..6500662 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/authors.html b/docs/authors.html
index 0263c61..c74d497 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -111,13 +111,13 @@ Citation
Schuemie M, Suchard M, Ryan P, Reps J, Sena A, Inberg G (2023).
FeatureExtraction: Generating Features for a Cohort.
-R package version 3.3.1, https://github.com/OHDSI/FeatureExtraction.
+R package version 3.3.2, https://github.com/OHDSI/FeatureExtraction.
@Manual{,
title = {FeatureExtraction: Generating Features for a Cohort},
author = {Martijn Schuemie and Marc Suchard and Patrick Ryan and Jenna Reps and Anthony Sena and Ger Inberg},
year = {2023},
- note = {R package version 3.3.1},
+ note = {R package version 3.3.2},
url = {https://github.com/OHDSI/FeatureExtraction},
}
diff --git a/docs/index.html b/docs/index.html
index b9174cf..32c1955 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -33,7 +33,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/news/index.html b/docs/news/index.html
index b4e7105..91de474 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -75,6 +75,11 @@ Changelog
Source: NEWS.md
+
+
+
Bug Fixes:
+
- Fixes R check on GitHub Actions (#211)
+
Bug Fixes:
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index be0abdc..93a986c 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -8,5 +8,5 @@ articles:
CreatingCustomCovariateBuildersKorean: CreatingCustomCovariateBuildersKorean.html
UsingFeatureExtraction: UsingFeatureExtraction.html
UsingFeatureExtractionKorean: UsingFeatureExtractionKorean.html
-last_built: 2023-09-25T19:05Z
+last_built: 2023-11-20T14:45Z
diff --git a/docs/pull_request_template.html b/docs/pull_request_template.html
index b097bdb..a5f083e 100644
--- a/docs/pull_request_template.html
+++ b/docs/pull_request_template.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/CovariateData-class.html b/docs/reference/CovariateData-class.html
index b47c525..a52609d 100644
--- a/docs/reference/CovariateData-class.html
+++ b/docs/reference/CovariateData-class.html
@@ -25,7 +25,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/FeatureExtraction-package.html b/docs/reference/FeatureExtraction-package.html
index 5f48066..0380737 100644
--- a/docs/reference/FeatureExtraction-package.html
+++ b/docs/reference/FeatureExtraction-package.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/aggregateCovariates.html b/docs/reference/aggregateCovariates.html
index 7ab3846..d746559 100644
--- a/docs/reference/aggregateCovariates.html
+++ b/docs/reference/aggregateCovariates.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/computeStandardizedDifference.html b/docs/reference/computeStandardizedDifference.html
index 5fc5f9a..c21cc22 100644
--- a/docs/reference/computeStandardizedDifference.html
+++ b/docs/reference/computeStandardizedDifference.html
@@ -18,7 +18,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/convertPrespecSettingsToDetailedSettings.html b/docs/reference/convertPrespecSettingsToDetailedSettings.html
index 2fb368e..c1d2f26 100644
--- a/docs/reference/convertPrespecSettingsToDetailedSettings.html
+++ b/docs/reference/convertPrespecSettingsToDetailedSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createAnalysisDetails.html b/docs/reference/createAnalysisDetails.html
index 906ae53..eb38d78 100644
--- a/docs/reference/createAnalysisDetails.html
+++ b/docs/reference/createAnalysisDetails.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createCohortAttrCovariateSettings.html b/docs/reference/createCohortAttrCovariateSettings.html
index a700e3a..125a5d2 100644
--- a/docs/reference/createCohortAttrCovariateSettings.html
+++ b/docs/reference/createCohortAttrCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createCohortBasedCovariateSettings.html b/docs/reference/createCohortBasedCovariateSettings.html
index be0d917..f7b8d32 100644
--- a/docs/reference/createCohortBasedCovariateSettings.html
+++ b/docs/reference/createCohortBasedCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createCohortBasedTemporalCovariateSettings.html b/docs/reference/createCohortBasedTemporalCovariateSettings.html
index cc77875..4de8496 100644
--- a/docs/reference/createCohortBasedTemporalCovariateSettings.html
+++ b/docs/reference/createCohortBasedTemporalCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createCovariateSettings.html b/docs/reference/createCovariateSettings.html
index b468b4d..f41e669 100644
--- a/docs/reference/createCovariateSettings.html
+++ b/docs/reference/createCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createDefaultCovariateSettings.html b/docs/reference/createDefaultCovariateSettings.html
index e9588db..f0346d3 100644
--- a/docs/reference/createDefaultCovariateSettings.html
+++ b/docs/reference/createDefaultCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createDefaultTemporalCovariateSettings.html b/docs/reference/createDefaultTemporalCovariateSettings.html
index 70435fd..2ce35cf 100644
--- a/docs/reference/createDefaultTemporalCovariateSettings.html
+++ b/docs/reference/createDefaultTemporalCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createDetailedCovariateSettings.html b/docs/reference/createDetailedCovariateSettings.html
index 831c883..84e5056 100644
--- a/docs/reference/createDetailedCovariateSettings.html
+++ b/docs/reference/createDetailedCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createDetailedTemporalCovariateSettings.html b/docs/reference/createDetailedTemporalCovariateSettings.html
index 4ef1ddf..c995a25 100644
--- a/docs/reference/createDetailedTemporalCovariateSettings.html
+++ b/docs/reference/createDetailedTemporalCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createEmptyCovariateData.html b/docs/reference/createEmptyCovariateData.html
index 296dc06..e561382 100644
--- a/docs/reference/createEmptyCovariateData.html
+++ b/docs/reference/createEmptyCovariateData.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createTable1.html b/docs/reference/createTable1.html
index ea9da20..69cea9a 100644
--- a/docs/reference/createTable1.html
+++ b/docs/reference/createTable1.html
@@ -18,7 +18,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createTable1CovariateSettings.html b/docs/reference/createTable1CovariateSettings.html
index 237ec58..11fa56c 100644
--- a/docs/reference/createTable1CovariateSettings.html
+++ b/docs/reference/createTable1CovariateSettings.html
@@ -19,7 +19,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createTemporalCovariateSettings.html b/docs/reference/createTemporalCovariateSettings.html
index 15ec2f6..f6eed2b 100644
--- a/docs/reference/createTemporalCovariateSettings.html
+++ b/docs/reference/createTemporalCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/createTemporalSequenceCovariateSettings.html b/docs/reference/createTemporalSequenceCovariateSettings.html
index c15fc6b..60f7ed2 100644
--- a/docs/reference/createTemporalSequenceCovariateSettings.html
+++ b/docs/reference/createTemporalSequenceCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/dot-createLooCovariateSettings.html b/docs/reference/dot-createLooCovariateSettings.html
index 923ff47..dfd08e0 100644
--- a/docs/reference/dot-createLooCovariateSettings.html
+++ b/docs/reference/dot-createLooCovariateSettings.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/dot-getDbLooCovariateData.html b/docs/reference/dot-getDbLooCovariateData.html
index 0f9b514..c6bdcec 100644
--- a/docs/reference/dot-getDbLooCovariateData.html
+++ b/docs/reference/dot-getDbLooCovariateData.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/filterByCohortDefinitionId.html b/docs/reference/filterByCohortDefinitionId.html
index e322cc4..40a5e30 100644
--- a/docs/reference/filterByCohortDefinitionId.html
+++ b/docs/reference/filterByCohortDefinitionId.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/filterByRowId.html b/docs/reference/filterByRowId.html
index b57c41f..37c911b 100644
--- a/docs/reference/filterByRowId.html
+++ b/docs/reference/filterByRowId.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/getDbCohortAttrCovariatesData.html b/docs/reference/getDbCohortAttrCovariatesData.html
index 988bc2d..d56b735 100644
--- a/docs/reference/getDbCohortAttrCovariatesData.html
+++ b/docs/reference/getDbCohortAttrCovariatesData.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/getDbCohortBasedCovariatesData.html b/docs/reference/getDbCohortBasedCovariatesData.html
index a97a39d..c4f2994 100644
--- a/docs/reference/getDbCohortBasedCovariatesData.html
+++ b/docs/reference/getDbCohortBasedCovariatesData.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/getDbCovariateData.html b/docs/reference/getDbCovariateData.html
index 312e8ce..5026acb 100644
--- a/docs/reference/getDbCovariateData.html
+++ b/docs/reference/getDbCovariateData.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/getDbDefaultCovariateData.html b/docs/reference/getDbDefaultCovariateData.html
index 131b744..e9c1d73 100644
--- a/docs/reference/getDbDefaultCovariateData.html
+++ b/docs/reference/getDbDefaultCovariateData.html
@@ -19,7 +19,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/getDefaultTable1Specifications.html b/docs/reference/getDefaultTable1Specifications.html
index a25c1fc..da6b234 100644
--- a/docs/reference/getDefaultTable1Specifications.html
+++ b/docs/reference/getDefaultTable1Specifications.html
@@ -18,7 +18,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 4c47d40..410423c 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -17,7 +17,7 @@
FeatureExtraction
- 3.3.1
+ 3.3.2
@@ -79,6 +79,10 @@