[GH-82] Enable concurrent stage in #84
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When `scratch` is enabled, use `nxf_parallel` to pull the input files.
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jealous
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This release includes the support for the `scratch` option. For s3 storage, allow the user to authorize with session token. It also includes several bugfixes. See the details below. What's Changed * [nextflow-ioGH-75] Too many `put xxx into map` log by @jealous in MemVerge/nf-float#76 * [nextflow-ioGH-77] Support s3 token authorization by @jealous in MemVerge/nf-float#78 * [nextflow-ioGH-77] Update the readme for s3 token by @jealous in MemVerge/nf-float#79 * [nextflow-ioGH-69] Support `float` in `ext` directive`. by @jealous in MemVerge/nf-float#80 * [nextflow-ioGH-63] Ignore the time limit by default. by @jealous in MemVerge/nf-float#81 * [nextflow-ioGH-82] Enable concurrent stage in by @jealous in MemVerge/nf-float#84 * [nextflow-ioGH-82] Default disk size to 6 GB. by @jealous in MemVerge/nf-float#85 * [FLOAT-4502] Avoid using plain credential. by @jealous in MemVerge/nf-float#86 **Full Changelog**: MemVerge/nf-float@0.4.3...0.4.4
jealous
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Sep 12, 2024
This release includes the support for the `scratch` option. For s3 storage, allow the user to authorize with session token. It also includes several bugfixes. See the details below. What's Changed: * [nextflow-ioGH-75] Too many `put xxx into map` log by @jealous in MemVerge/nf-float#76 * [nextflow-ioGH-77] Support s3 token authorization by @jealous in MemVerge/nf-float#78 * [nextflow-ioGH-77] Update the readme for s3 token by @jealous in MemVerge/nf-float#79 * [nextflow-ioGH-69] Support `float` in `ext` directive`. by @jealous in MemVerge/nf-float#80 * [nextflow-ioGH-63] Ignore the time limit by default. by @jealous in MemVerge/nf-float#81 * [nextflow-ioGH-82] Enable concurrent stage in by @jealous in MemVerge/nf-float#84 * [nextflow-ioGH-82] Default disk size to 6 GB. by @jealous in MemVerge/nf-float#85 * [FLOAT-4502] Avoid using plain credential. by @jealous in MemVerge/nf-float#86 * [GH-87] Log parsing error for job ID by @jealous in MemVerge/nf-float#88 * [nextflow-ioGH-89] Use default disk size of MMC by @jealous in MemVerge/nf-float#90 * [nextflow-ioGH-91] default file stage in strategy to copy by @jealous in MemVerge/nf-float#92 **Full Changelog**: MemVerge/nf-float@0.4.3...0.4.4
pditommaso
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Sep 12, 2024
This release includes the support for the `scratch` option. For s3 storage, allow the user to authorize with session token. It also includes several bugfixes. See the details below. What's Changed: * [GH-75] Too many `put xxx into map` log by @jealous in MemVerge/nf-float#76 * [GH-77] Support s3 token authorization by @jealous in MemVerge/nf-float#78 * [GH-77] Update the readme for s3 token by @jealous in MemVerge/nf-float#79 * [GH-69] Support `float` in `ext` directive`. by @jealous in MemVerge/nf-float#80 * [GH-63] Ignore the time limit by default. by @jealous in MemVerge/nf-float#81 * [GH-82] Enable concurrent stage in by @jealous in MemVerge/nf-float#84 * [GH-82] Default disk size to 6 GB. by @jealous in MemVerge/nf-float#85 * [FLOAT-4502] Avoid using plain credential. by @jealous in MemVerge/nf-float#86 * [GH-87] Log parsing error for job ID by @jealous in MemVerge/nf-float#88 * [GH-89] Use default disk size of MMC by @jealous in MemVerge/nf-float#90 * [GH-91] default file stage in strategy to copy by @jealous in MemVerge/nf-float#92 **Full Changelog**: MemVerge/nf-float@0.4.3...0.4.4
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When
scratchis enabled, usenxf_parallelto pull the input files.