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Are adapter-trimmed FASTQs required? #283

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benayang opened this issue Jun 14, 2022 · 3 comments
Open

Are adapter-trimmed FASTQs required? #283

benayang opened this issue Jun 14, 2022 · 3 comments

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@benayang
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I was wondering why the ChIP-Seq pipeline doesn't include an adapter trimming step like in the ATAC-Seq pipeline. Are adapter-trimmed FASTQs required for this pipeline?
@wbszhu
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wbszhu commented Mar 6, 2023

I have the same confuse.

@leepc12
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leepc12 commented Mar 6, 2023

Our ChIP-Seq doesn't have such adapter trimming as in ATAC-Seq one.

@wbszhu
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wbszhu commented Mar 10, 2023

Thank you for your reply~
I believe that if this functionality is added, the pipeline will be even better！
Lu Zhang.

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@leepc12 @benayang @wbszhu