{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":87345761,"defaultBranch":"master","name":"RepeatModeler","ownerLogin":"Dfam-consortium","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-04-05T18:56:46.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/40807771?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1696438620.0","currentOid":""},"activityList":{"items":[{"before":"d97ad994efc2558430aa54bcc7f9ec5ca5918851","after":"fe75e84cf81374f230ad85fec72637e162b16462","ref":"refs/heads/development","pushedAt":"2024-09-23T21:46:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rmhubley","name":"Robert Hubley","path":"/rmhubley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10344578?s=80&v=4"},"commit":{"message":" - Arian fixed a few bugs with extendFlankingSeqs. It was incorectly\n parsing the format \"seq_id:start-end_R\". He also made this format\n the default for output. Finally there was an problem when \"shrink\"\n was used.","shortMessageHtmlLink":" - Arian fixed a few bugs with extendFlankingSeqs. It was incorectly"}},{"before":"bea7508204e111051f6e6a9dc2a002ae92056227","after":"d97ad994efc2558430aa54bcc7f9ec5ca5918851","ref":"refs/heads/development","pushedAt":"2024-03-22T22:26:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rmhubley","name":"Robert Hubley","path":"/rmhubley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10344578?s=80&v=4"},"commit":{"message":"MultAln.pm:\n - Added caculateKimuraDivergence()\n to replace kimuraDivergence() which didn't have\n a the ability to calc the CpG modified version of Kimura.\n\n - Modified filterOnGC() - fixed a problem with orientation\n and honoring RF line.\n\n - Added slice()\n\n - Add subcoordinates to seed alignment\n\nNeedlemanWunschGotohAlgorithm.pm:\n - Added percent sub/del/ins\n\nRefiner:\n - Switched to using the new calculateKimuraDivergence() function\n\nSeedAlignment.pm:\n - New get/setAccession() members\n\nLinup:\n - New trimming functionality\n - New subAlign/minLen options\n - Switched to using the new calculateKimuraDivergence() function\n - Sanity check for RF/consensus occupancy differences.\n\nalign.pl:\n - New bed3/bed6 support\n - New KA stats support\n\ngenerateSeedAlignments.pl:\n - new consensi/outTable/outAlign options\n\nAlignmentSummary.js\n - Fixed rendering, added option for groupById","shortMessageHtmlLink":"MultAln.pm:"}},{"before":"afa4e4fddea85078e3a3ea20e638b7b2b034883b","after":"5f638de46df79254ba2065c7f598d71625f8a258","ref":"refs/heads/master","pushedAt":"2023-10-04T16:55:08.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"rmhubley","name":"Robert Hubley","path":"/rmhubley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10344578?s=80&v=4"},"commit":{"message":"Merge pull request #218 from Dfam-consortium/development\n\nDevelopment","shortMessageHtmlLink":"Merge pull request #218 from Dfam-consortium/development"}},{"before":"4ae811522ad19cf289fedd35005d539d60d0802a","after":"bea7508204e111051f6e6a9dc2a002ae92056227","ref":"refs/heads/development","pushedAt":"2023-10-04T16:54:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rmhubley","name":"Robert Hubley","path":"/rmhubley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10344578?s=80&v=4"},"commit":{"message":" - 2.0.5 release","shortMessageHtmlLink":" - 2.0.5 release"}},{"before":"0938f199b2318290b72b603756d7c0b260a874ff","after":"4ae811522ad19cf289fedd35005d539d60d0802a","ref":"refs/heads/development","pushedAt":"2023-09-25T17:10:53.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rmhubley","name":"Robert Hubley","path":"/rmhubley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10344578?s=80&v=4"},"commit":{"message":" Developing 2.0.5","shortMessageHtmlLink":" Developing 2.0.5"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yM1QyMTo0NjoxNi4wMDAwMDBazwAAAAS-d93r","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yM1QyMTo0NjoxNi4wMDAwMDBazwAAAAS-d93r","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wOS0yNVQxNzoxMDo1My4wMDAwMDBazwAAAAOIbsjk"}},"title":"Activity ยท Dfam-consortium/RepeatModeler"}