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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(AdjScoreClustersCITE)
export(AdjScoreClustersCITE.internal)
export(AdjScoreClustersCODEX)
export(AdjScoreClustersCODEX.internal)
export(AdjScoreGenes)
export(AdjScoreGenes.internal)
export(AdjScoreHeatmap)
export(AdjScoreProteins)
export(AdjScoreProteins.internal)
export(AnchorCorrection)
export(CleanCITE)
export(CleanCITE.gaussian.internal)
export(CleanCITE.nb.internal)
export(CleanCODEX)
export(CleanCODEX.gaussian.internal)
export(CleanCODEX.nb.internal)
export(ClusterCODEX)
export(ClusterCODEX.internal)
export(ConsensusCluster)
export(ConsensusCluster.internal)
export(FilterAnchors)
export(FilterCITEmRNA)
export(FilterCODEX)
export(FilterCODEX.internal)
export(FindAnchorPairs)
export(FindIntegrationMatrix)
export(FindNN)
export(FindNNrna)
export(FindWeights)
export(GetTransferMatrix)
export(GetTransferMatrix.internal)
export(GetUmapCITE)
export(GetUmapCODEX)
export(KnnCODEX)
export(MapCODEXtoCITE)
export(MapCODEXtoCITE.internal)
export(ParameterScan)
export(ParameterScan.internal)
export(PlotClusterCITE)
export(PlotClusterCODEXemb)
export(PlotClusterCODEXspatial)
export(PlotExprCITE)
export(PlotExprCODEXemb)
export(PlotExprCODEXspatial)
export(PlotIndexCITE)
export(PlotIndexCODEXemb)
export(PlotIndexCODEXspatial)
export(ReadDataFCS)
export(ReadNamesFCS)
export(RunCCA)
export(ScoreAnchors)
export(SetDataCITE)
export(SetDataCODEX)
export(TransferDataSeurat2)
export(TransformDataMatrix)
import(AdjacencyScore)
import(Matrix)
import(ggplot2)
import(mclust)
import(pheatmap)
importFrom(RANN,nn2)
importFrom(cluster,silhouette)
importFrom(colorspace,rainbow_hcl)
importFrom(flowCore,arcsinhTransform)
importFrom(flowCore,read.FCS)
importFrom(flowCore,transform)
importFrom(flowCore,transformList)
importFrom(igraph,graph_from_edgelist)
importFrom(igraph,multilevel.community)
importFrom(irlba,irlba)
importFrom(mclust,Mclust)
importFrom(parallel,mclapply)
importFrom(stats,optim)
importFrom(stringr,str_match)
importFrom(tidyr,gather)