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LDlinkR (development version)

LDlinkR 1.4.0

  • Added Zenodo DOI badge in version 1.3.0.9000
  • 3/1/2024 - Increased maximum allowed variants in LDmatrix to 2500
  • 3/1/2024 - Added bp window size parameter to LDproxy
  • 3/4/2024 - Add bp window size parameter to LDproxy_batch

LDlinkR 1.3.0.9000 (development version)

  • Add Zenodo DOI badge
  • To do: Increase maximum allowed variants in LDmatrix to 3000.

LDlinkR 1.3.0

  • Change LDlink Domain URL to https://ldlink.nih.gov/ (previous url root will no longer work following an unspecified amount of time).
  • Add Continuous Integration using Github Actions.
  • Update citation file with bibentry style

LDlinkR 1.2.3

  • Add feature to provide root URL to API
  • Fix bug that scrambled columns in LDproxy_batch when 'append' option is TRUE
  • Update Roxygen version to 7.2.2

LDlinkR 1.2.2

  • Issue #19, fix bug in LDtrait error handling of response data.
  • Update CRAN downloads badge in README
  • Remove link for 1000 Genomes Project in README and vignette

LDlinkR 1.2.1

  • Update version number
  • Fix bug in LDexpress that returned GRCH37 results when genome build was GRCh38 or GRCh38 High Coverage.
  • Fix bug in LDproxy handling of error/warning messages in response data.
  • Update RoxygenNote to 7.2.0

LDlinkR 1.2.0

  • Submission date: 2022-05-11
  • Issue #13 - Add new argument to LDhap (table_type) with four options for different types data output.
  • Issue #14 - Fix LDhap valid input check for number of input 'snps', line 94.
  • Add 'snps' to the WORDLIST
  • Update test-ldhap with additional tests
  • Update vignette with new LDhap usage examples with new argument.
  • Make LDhap able to write to file for both types of data returned by the new 'table_type' options.
  • Add feature 'genome_build' to support different genome builds, GRCh37(hg19), GRCh38(hg38), and GRCh38 High Coverage.
  • Improve/update error and warning message returned in the response data from the LDlink API server.
  • Fix CRAN note about 'LazyData' by removing line from Description file.
  • Update README file.
  • Add testthat tests for feature genome_build
  • Add three new Illumina chips to SNPchip
  • Add two new Affymetrix chips to SNPchip
  • Major update to vignette with new feature genome_build

LDlinkR 1.1.2

  • Submission date: 2021-02-19
  • Add link to LDlink web site documentation.
  • Correct code chunk in vignette FAQ #4, changed option to eval=FALSE; this vignette code chunk no longer requires an internet resource
  • added notes to README and vignette that 'internet access required' to use
  • Add code to check if required internet resources are available per CRAN

LDlinkR 1.1.1

  • Release date: 2021-02-02
  • Added three new functions, LDtrait, LDexpress & list_gtex_tissues
  • Updated vignette with new descriptions of functions and examples.
  • Major update to README.md, including basic examples
  • Added a NEWS.md file to track changes to the package.
  • Issue #2, fixed warning message from write.table in LDproxy_batch when append = TRUE
  • Updated most function descriptions on package help page
  • Added spell checking for building package

LDlinkR 1.0.2

  • Release date 2020-03-02
  • Minor updates

LDlinkR 1.0.1

  • Release date 2019-10-17
  • Minor updates made for publication.

LDlinkR 1.0.0

  • Release date 2019-08-01
  • Initial release.