Simple program for in silico restriction digest of genomic sequences, to simulate RAD-family NGS library prep methods
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Jul 26, 2019 - Perl
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ddrad-seq
Here are 7 public repositories matching this topic...
This repository contains scripts for NYC oyster admixture project
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Jul 4, 2025 - R
This repository provides a comprehensive tutorial for phylogenetic analysis, covering data collection, sequence alignment, tree construction, and interpretation. It runs on AWS SageMaker using Jupyter notebooks and includes tools like MAFFT, Nextclade, and IQ-TREE.
python bioinformatics gcp computational-biology phylogenetic-trees phylogenetics population-genetics high-throughput-sequencing genome-assembly r-programming radseq ipyrad ddrad-seq iqtree phylogenetic-inference
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Jun 6, 2025 - Jupyter Notebook
ddRaptor helps you choose optimal ddRAD enzyme pairs by simulating in-silico digests, counting size-filtered fragments, and visualizing results in tables and heatmaps.
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May 25, 2025 - Rust
A tutorial for reproducting outlier tests based on temporal differentiation
snps slim-framework outlier-detection population-genomics population-genetics fst temporal-data ddrad-seq
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Apr 8, 2024
Scripts repo for Atlantic surf clams (Spisula solidissima solidissima) manuscript
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Jun 19, 2025 - Gnuplot
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