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[Bug]: warning running tm_g_km example #419

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@llrs-roche

Description

@llrs-roche

What happened?

While running the Kaplan-Meier module (tm_g_km) I see a warning:

Warning: the strat element name of the variables list argument to h_tbl_coxph_pairwise() was deprecated in tern 0.9.4. Please use the name stratainstead ofstratin thevariables` argument.

sessionInfo()

R version 4.5.0 (2025-04-11 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 22631)

Matrix products: default
  LAPACK version 3.12.1

locale:
[1] LC_COLLATE=Spanish_Spain.utf8  LC_CTYPE=Spanish_Spain.utf8   
[3] LC_MONETARY=Spanish_Spain.utf8 LC_NUMERIC=C                  
[5] LC_TIME=Spanish_Spain.utf8    

time zone: Europe/Madrid
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] dplyr_1.1.4                    shinytest2_0.4.1              
 [3] teal.modules.hermes_0.2.0.9003 testthat_3.2.3                
 [5] teal_0.16.0.9005               teal.slice_0.6.0.9003         
 [7] teal.data_0.7.0.9002           teal.code_0.6.1.9000          
 [9] shiny_1.10.0                   ggplot2_3.5.2                 
[11] pkgdown_2.1.2                  devtools_2.4.5                
[13] usethis_3.1.0                 

loaded via a namespace (and not attached):
  [1] splines_4.5.0               later_1.4.2                 hermes_1.12.0              
  [4] filelock_1.0.3              tibble_3.2.1                lifecycle_1.0.4            
  [7] httr2_1.1.2                 rutils_0.0.2.92             Rdpack_2.6.4               
 [10] nestcolor_0.1.3.9000        gert_2.1.5                  edgeR_4.6.1                
 [13] doParallel_1.0.17           rprojroot_2.0.4             processx_3.8.6             
 [16] lattice_0.22-7              crosstalk_1.2.1             credentials_2.0.2          
 [19] MultiAssayExperiment_1.34.0 backports_1.5.0             magrittr_2.0.3             
 [22] limma_3.64.0                sass_0.4.10                 rmarkdown_2.29             
 [25] jquerylib_0.1.4             yaml_2.3.10                 remotes_2.5.0              
 [28] httpuv_1.6.16               askpass_1.2.1               sessioninfo_1.2.3          
 [31] pkgbuild_1.4.7              cowplot_1.1.3               DBI_1.2.3                  
 [34] RColorBrewer_1.1-3          abind_1.4-8                 pkgload_1.4.0              
 [37] GenomicRanges_1.60.0        purrr_1.0.4                 BiocGenerics_0.54.0        
 [40] rappdirs_0.3.3              circlize_0.4.16             GenomeInfoDbData_1.2.14    
 [43] IRanges_2.42.0              S4Vectors_0.46.0            ggrepel_0.9.6              
 [46] gitcreds_0.1.2              teal.widgets_0.4.3.9002     teal.reporter_0.4.0.9004   
 [49] codetools_0.2-20            DelayedArray_0.34.1         DT_0.33                    
 [52] xml2_1.3.8                  tidyselect_1.2.1            shape_1.4.6.1              
 [55] UCSC.utils_1.4.0            shinyRadioMatrix_0.2.1      farver_2.1.2               
 [58] shinyWidgets_0.9.0          matrixStats_1.5.0           stats4_4.5.0               
 [61] BiocFileCache_2.16.0        jsonlite_2.0.0              GetoptLong_1.0.5           
 [64] ellipsis_0.3.2              survival_3.8-3              iterators_1.0.14           
 [67] systemfonts_1.2.3           foreach_1.5.2               tools_4.5.0                
 [70] progress_1.2.3              ragg_1.4.0                  rtables_0.6.12.9000        
 [73] Rcpp_1.0.14                 glue_1.8.0                  gridExtra_2.3              
 [76] SparseArray_1.8.0           BiocBaseUtils_1.10.0        DESeq2_1.48.0              
 [79] xfun_0.52                   MatrixGenerics_1.20.0       ggfortify_0.4.17           
 [82] GenomeInfoDb_1.44.0         withr_3.0.2                 formatR_1.14               
 [85] fastmap_1.2.0               shinyjs_2.1.0               openssl_2.3.2              
 [88] callr_3.7.6                 digest_0.6.37               R6_2.6.1                   
 [91] mime_0.13                   textshaping_1.0.1           colorspace_2.1-1           
 [94] biomaRt_2.64.0              RSQLite_2.3.11              tidyr_1.3.1                
 [97] generics_0.1.4              renv_1.1.4                  prettyunits_1.2.0          
[100] httr_1.4.7                 
 [ reached 'max' / getOption("max.print") -- omitted 70 entries ]

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