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Sean Smith
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Explain error with clusters
Signed-off-by: Sean Smith <seaam@amazon.com>
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content/04-container-parallelcluster/04-launch-nextflow.md

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@@ -94,5 +94,14 @@ The output of the job will be in the `nextflow_[SLURM_JOB_ID].out` file and simi
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![Singularity run](/images/container-pc/singularity_nextflow.png)
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{{% notice warning %}}
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There was a previous error with this tutorial that had the wrong github url
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`https://github.com/aws-samples/aws-hpc-tutorials/blob/isc22/static/scripts/post-install/container-install.sh`
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This was resolved in [#260](https://github.com/aws-samples/aws-hpc-tutorials/pull/260).
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If you hit this error you can debug it by looking at the **Logs** tab and looking at the **cloud-init-output** log of one of the compute nodes like so:
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![Logs Tab](/images/container-pc/pcm-logs.png)
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To resolve this, update the cluster to use the url `https://github.com/aws-samples/aws-hpc-tutorials/isc22/static/scripts/post-install/container-install.sh`
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{{% /notice %}}
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You have now run a basic genomics pipeline and you won't need the cluster in the next labs.
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The next section will go over how to delete your HPC Cluster.
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