diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
index 6c634e76..6532c43a 100644
--- a/docs/build/html/.buildinfo
+++ b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: cda440a90b02806b8875d767ce4b3688
+config: 0cb4dce3458a66b690cafc7e7336da8c
tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/.doctrees/classes/spatialpy.core.doctree b/docs/build/html/.doctrees/classes/spatialpy.core.doctree
index 8cb7bdee..0af1f4b3 100644
Binary files a/docs/build/html/.doctrees/classes/spatialpy.core.doctree and b/docs/build/html/.doctrees/classes/spatialpy.core.doctree differ
diff --git a/docs/build/html/.doctrees/classes/spatialpy.doctree b/docs/build/html/.doctrees/classes/spatialpy.doctree
index 451962c7..c3ed73aa 100644
Binary files a/docs/build/html/.doctrees/classes/spatialpy.doctree and b/docs/build/html/.doctrees/classes/spatialpy.doctree differ
diff --git a/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree b/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree
index d2592a4f..e789219f 100644
Binary files a/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree and b/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree differ
diff --git a/docs/build/html/.doctrees/classes/spatialpy.stochss.doctree b/docs/build/html/.doctrees/classes/spatialpy.stochss.doctree
index 765aeab2..d018a9e6 100644
Binary files a/docs/build/html/.doctrees/classes/spatialpy.stochss.doctree and b/docs/build/html/.doctrees/classes/spatialpy.stochss.doctree differ
diff --git a/docs/build/html/.doctrees/environment.pickle b/docs/build/html/.doctrees/environment.pickle
index 1f69f707..54e657e3 100644
Binary files a/docs/build/html/.doctrees/environment.pickle and b/docs/build/html/.doctrees/environment.pickle differ
diff --git a/docs/build/html/.doctrees/index.doctree b/docs/build/html/.doctrees/index.doctree
index 1fdc4a36..c66dd009 100644
Binary files a/docs/build/html/.doctrees/index.doctree and b/docs/build/html/.doctrees/index.doctree differ
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
index b04b064f..376c8703 100644
--- a/docs/build/html/_modules/index.html
+++ b/docs/build/html/_modules/index.html
@@ -1,4 +1,3 @@
-
@@ -10,9 +9,6 @@
All modules for which code is available
©Copyright (C) 2019-2023.
|
- Powered by Sphinx 5.3.0
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
diff --git a/docs/build/html/_static/basic.css b/docs/build/html/_static/basic.css
index 4e9a9f1f..7577acb1 100644
--- a/docs/build/html/_static/basic.css
+++ b/docs/build/html/_static/basic.css
@@ -4,7 +4,7 @@
*
* Sphinx stylesheet -- basic theme.
*
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
@@ -324,6 +324,7 @@ aside.sidebar {
p.sidebar-title {
font-weight: bold;
}
+
nav.contents,
aside.topic,
div.admonition, div.topic, blockquote {
@@ -331,6 +332,7 @@ div.admonition, div.topic, blockquote {
}
/* -- topics ---------------------------------------------------------------- */
+
nav.contents,
aside.topic,
div.topic {
@@ -606,6 +608,7 @@ ol.simple p,
ul.simple p {
margin-bottom: 0;
}
+
aside.footnote > span,
div.citation > span {
float: left;
diff --git a/docs/build/html/_static/doctools.js b/docs/build/html/_static/doctools.js
index 527b876c..d06a71d7 100644
--- a/docs/build/html/_static/doctools.js
+++ b/docs/build/html/_static/doctools.js
@@ -4,7 +4,7 @@
*
* Base JavaScript utilities for all Sphinx HTML documentation.
*
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
diff --git a/docs/build/html/_static/language_data.js b/docs/build/html/_static/language_data.js
index 2e22b06a..250f5665 100644
--- a/docs/build/html/_static/language_data.js
+++ b/docs/build/html/_static/language_data.js
@@ -5,7 +5,7 @@
* This script contains the language-specific data used by searchtools.js,
* namely the list of stopwords, stemmer, scorer and splitter.
*
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
diff --git a/docs/build/html/_static/searchtools.js b/docs/build/html/_static/searchtools.js
index e89e34d4..97d56a74 100644
--- a/docs/build/html/_static/searchtools.js
+++ b/docs/build/html/_static/searchtools.js
@@ -4,7 +4,7 @@
*
* Sphinx JavaScript utilities for the full-text search.
*
- * :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
diff --git a/docs/build/html/classes/spatialpy.core.html b/docs/build/html/classes/spatialpy.core.html
index 9c2b16d3..ce44af17 100644
--- a/docs/build/html/classes/spatialpy.core.html
+++ b/docs/build/html/classes/spatialpy.core.html
@@ -1,19 +1,15 @@
-
spatialpy.core package — SpatialPy 1.2.2 documentation
Submodules
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
|
diff --git a/docs/build/html/classes/spatialpy.html b/docs/build/html/classes/spatialpy.html
index ec0794c1..8ffdee07 100644
--- a/docs/build/html/classes/spatialpy.html
+++ b/docs/build/html/classes/spatialpy.html
@@ -1,19 +1,15 @@
-
spatialpy package — SpatialPy 1.2.2 documentation
Subpackages
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
|
diff --git a/docs/build/html/classes/spatialpy.solvers.html b/docs/build/html/classes/spatialpy.solvers.html
index 2669b67e..8a827686 100644
--- a/docs/build/html/classes/spatialpy.solvers.html
+++ b/docs/build/html/classes/spatialpy.solvers.html
@@ -1,19 +1,15 @@
-
spatialpy.solvers package — SpatialPy 1.2.2 documentation
Submodules
@@ -954,7 +950,7 @@ Submodules
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
|
diff --git a/docs/build/html/classes/spatialpy.stochss.html b/docs/build/html/classes/spatialpy.stochss.html
index d5ac440d..9c299917 100644
--- a/docs/build/html/classes/spatialpy.stochss.html
+++ b/docs/build/html/classes/spatialpy.stochss.html
@@ -1,19 +1,15 @@
-
spatialpy.stochss package — SpatialPy 1.2.2 documentation
Submodules
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
|
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
index bf239fcc..97c13174 100644
--- a/docs/build/html/genindex.html
+++ b/docs/build/html/genindex.html
@@ -1,4 +1,3 @@
-
@@ -10,9 +9,6 @@
X
©Copyright (C) 2019-2023.
|
- Powered by Sphinx 5.3.0
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
diff --git a/docs/build/html/index.html b/docs/build/html/index.html
index 2b7779d3..2389f172 100644
--- a/docs/build/html/index.html
+++ b/docs/build/html/index.html
@@ -1,19 +1,15 @@
-
Documentation for SpatialPy 1.2.2 — SpatialPy 1.2.2 documentation
Indices and tables
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
|
diff --git a/docs/build/html/py-modindex.html b/docs/build/html/py-modindex.html
index 5bbe957f..679ee4a2 100644
--- a/docs/build/html/py-modindex.html
+++ b/docs/build/html/py-modindex.html
@@ -1,4 +1,3 @@
-
@@ -10,9 +9,6 @@
Python Module Index
©Copyright (C) 2019-2023.
|
- Powered by Sphinx 5.3.0
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
diff --git a/docs/build/html/search.html b/docs/build/html/search.html
index f923a57f..d23d621e 100644
--- a/docs/build/html/search.html
+++ b/docs/build/html/search.html
@@ -1,4 +1,3 @@
-
@@ -11,9 +10,6 @@
Search
©Copyright (C) 2019-2023.
|
- Powered by Sphinx 5.3.0
+ Powered by Sphinx 7.0.1
& Alabaster 0.7.13
diff --git a/docs/build/html/searchindex.js b/docs/build/html/searchindex.js
index 3e6346b5..11e471b1 100644
--- a/docs/build/html/searchindex.js
+++ b/docs/build/html/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["classes/spatialpy", "classes/spatialpy.core", "classes/spatialpy.solvers", "classes/spatialpy.stochss", "index"], "filenames": ["classes/spatialpy.rst", "classes/spatialpy.core.rst", "classes/spatialpy.solvers.rst", "classes/spatialpy.stochss.rst", "index.rst"], "titles": ["spatialpy package", "spatialpy.core package", "spatialpy.solvers package", "spatialpy.stochss package", "Documentation for SpatialPy 1.2.2"], "terms": {"core": [0, 2, 3, 4], "submodul": 0, "boundarycondit": 0, "express": [0, 1, 2], "cleanup": 0, "cleanup_build_fil": [0, 1], "cleanup_core_fil": [0, 1], "cleanup_result_fil": [0, 1], "cleanup_tempfil": [0, 1], "datafunct": 0, "map": [0, 1, 2], "domain": [0, 4], "add_fill_act": [0, 1], "add_point": [0, 1], "add_remove_act": [0, 1], "add_set_act": [0, 1], "apply_act": [0, 1], "apply_fill_act": [0, 1], "apply_remove_act": [0, 1], "apply_set_act": [0, 1], "calculate_vol": [0, 1], "closest_vertex": [0, 1], "compile_prep": [0, 1], "coordin": [0, 1], "create_2d_domain": [0, 1], "create_3d_domain": [0, 1], "distance_between_2_vertic": [0, 1], "fill_with_particl": [0, 1], "find_boundary_point": [0, 1], "find_h": [0, 1], "get_bounding_box": [0, 1], "get_domain_s": [0, 1], "get_num_voxel": [0, 1], "get_type_def": [0, 1], "get_vol": [0, 1], "import_meshio_object": [0, 1], "plot_typ": [0, 1], "preview_act": [0, 1], "read_msh_fil": [0, 1], "read_stochss_domain": [0, 1], "read_stochss_subdomain_fil": [0, 1], "read_xml_mesh": [0, 1], "set_properti": [0, 1], "validate_act": [0, 1], "geometri": 0, "combinatorygeometri": [0, 1], "insid": [0, 1], "valid": [0, 1, 2], "geometryal": [0, 1], "geometryexterior": [0, 1], "geometryinterior": [0, 1], "initialcondit": 0, "appli": [0, 1], "placeinitialcondit": [0, 1], "scatterinitialcondit": [0, 1], "uniforminitialcondit": [0, 1], "lattic": 0, "cartesianlattic": [0, 1], "cylindricallattic": [0, 1], "meshiolattic": [0, 1], "sphericallattic": [0, 1], "stochsslattic": [0, 1], "xmlmeshlattic": [0, 1], "model": [0, 2, 3, 4], "add": [0, 1, 2], "add_boundary_condit": [0, 1], "add_data_funct": [0, 1], "add_domain": [0, 1], "add_initial_condit": [0, 1], "add_paramet": [0, 1], "add_react": [0, 1], "add_speci": [0, 1], "delete_all_boundary_condit": [0, 1], "delete_all_data_funct": [0, 1], "delete_all_initial_condit": [0, 1], "delete_all_paramet": [0, 1], "delete_all_react": [0, 1], "delete_all_speci": [0, 1], "delete_boundary_condit": [0, 1], "delete_data_funct": [0, 1], "delete_initial_condit": [0, 1], "delete_paramet": [0, 1], "delete_react": [0, 1], "delete_speci": [0, 1], "get_all_boundary_condit": [0, 1], "get_all_data_funct": [0, 1], "get_all_initial_condit": [0, 1], "get_all_paramet": [0, 1], "get_all_react": [0, 1], "get_all_speci": [0, 1], "get_data_funct": [0, 1], "get_el": [0, 1], "get_num_react": [0, 1], "get_num_speci": [0, 1], "get_paramet": [0, 1], "get_react": [0, 1], "get_speci": [0, 1], "reserved_nam": [0, 1], "run": [0, 1, 2], "sanitized_data_function_nam": [0, 1], "sanitized_parameter_nam": [0, 1], "sanitized_species_nam": [0, 1], "set_timestep": [0, 1], "special_charact": [0, 1], "timespan": 0, "update_namespac": [0, 1], "export_stochss": [0, 1], "paramet": [0, 2, 3], "reaction": [0, 4], "add_product": [0, 1], "annot": [0, 1], "from_json": [0, 1], "initi": [0, 1], "sanitized_propensity_funct": [0, 1], "set_annot": [0, 1], "set_propens": [0, 1], "set_rat": [0, 1], "to_dict": [0, 1], "result": [0, 2], "export_to_csv": [0, 1], "get_properti": [0, 1], "get_timespan": [0, 1], "plot_properti": [0, 1], "plot_speci": [0, 1], "read_step": [0, 1], "spatialpyerror": 0, "boundaryconditionerror": [0, 1], "datafunctionerror": [0, 1], "domainerror": [0, 1], "geometryerror": [0, 1], "initialconditionerror": [0, 1], "latticeerror": [0, 1], "modelerror": [0, 1], "parametererror": [0, 1], "reactionerror": [0, 1], "resulterror": [0, 1], "simulationerror": [0, 1, 2], "simulationtimeout": [0, 1], "specieserror": [0, 1], "timespanerror": [0, 1], "transformationerror": [0, 1], "vtkreadererror": [0, 1], "vtkreaderioerror": [0, 1], "visualizationerror": [0, 1], "speci": 0, "set_diffusion_coeffici": [0, 1], "arang": [0, 1], "linspac": [0, 1], "transform": 0, "reflectiontransform": [0, 1], "reverse_transform": [0, 1], "rotationtransform": [0, 1], "scalingtransform": [0, 1], "translationtransform": [0, 1], "visual": 0, "mpl_height": [0, 1], "mpl_size": [0, 1], "mpl_width": [0, 1], "plot_scatt": [0, 1], "vtkreader": 0, "get_array_nam": [0, 1], "get_arrai": [0, 1], "get_num_point": [0, 1], "get_point": [0, 1], "read_fil": [0, 1], "set_filenam": [0, 1], "solver": [0, 1, 4], "build_express": 0, "buildexpress": [0, 2], "validationvisitor": [0, 2], "getexpr_cpp": [0, 2], "getexpr_python": [0, 2], "map_oper": [0, 2], "operator_map": [0, 2], "with_blacklist": [0, 2], "with_namespac": [0, 2], "cppconvert": [0, 2], "cppexpressiontransform": [0, 2], "get_str": [0, 2], "visit_and": [0, 2], "visit_or": [0, 2], "expressionconvert": [0, 2], "convert_str": [0, 2], "parse_comparison": [0, 2], "parse_log": [0, 2], "parse_oper": [0, 2], "visit_add": [0, 2], "visit_binop": [0, 2], "visit_boolop": [0, 2], "visit_byt": [0, 2], "visit_cal": [0, 2], "visit_compar": [0, 2], "visit_const": [0, 2], "visit_div": [0, 2], "visit_ellipsi": [0, 2], "visit_eq": [0, 2], "visit_gt": [0, 2], "visit_lt": [0, 2], "visit_mult": [0, 2], "visit_nam": [0, 2], "visit_nameconst": [0, 2], "visit_noteq": [0, 2], "visit_num": [0, 2], "visit_pow": [0, 2], "visit_str": [0, 2], "visit_sub": [0, 2], "visit_usub": [0, 2], "visit_unaryop": [0, 2], "expressionresult": [0, 2], "pythonconvert": [0, 2], "compil": [0, 1, 2], "stochss": [0, 1, 4], "stochss_export": 0, "export": [0, 1, 3], "class": [1, 2], "xmin": 1, "none": [1, 2, 3], "xmax": 1, "ymin": 1, "ymax": 1, "zmin": 1, "zmax": 1, "type_id": 1, "determinist": [1, 4], "true": [1, 2, 3], "target": [1, 2], "valu": [1, 2], "sourc": [1, 2, 3, 4], "base": [1, 2, 4], "object": [1, 2], "set": [1, 2], "spatial": [1, 2, 4], "region": 1, "where": 1, "properti": [1, 2], "particl": [1, 4], "ar": [1, 2], "held": 1, "constant": [1, 2], "updat": 1, "each": 1, "simul": [1, 2, 4], "step": 1, "condit": [1, 2], "one": [1, 2], "more": [1, 2, 4], "follow": [1, 2], "must": 1, "float": 1, "min": 1, "max": 1, "x": 1, "dimens": 1, "y": 1, "z": 1, "type": [1, 2, 3], "subdomain": 1, "partcil": 1, "str": [1, 2, 3], "nu": 1, "rho": 1, "v": 1, "name": [1, 2], "chemic": 1, "also": [1, 2, 4], "fals": [1, 2, 3], "flag": [1, 2], "axi": 1, "lower": 1, "bound": 1, "upper": 1, "int": [1, 2], "id": 1, "bool": [1, 2, 3], "i": [1, 2, 3, 4], "boundari": 1, "yet": 1, "implemenet": 1, "stochast": [1, 4], "can": [1, 2, 4], "If": [1, 2, 4], "determinst": 1, "3": [1, 4], "take": 1, "defin": [1, 2], "creat": [1, 2], "evalu": 1, "string": [1, 2], "return": [1, 2, 3], "A": [1, 2, 4], "represent": [1, 2], "build_dir": 1, "all": [1, 2], "spatialpy_build": 1, "directori": 1, "path": [1, 3], "build": [1, 2, 4], "remov": 1, "option": 1, "tempfil": 1, "result_dir": 1, "spatialpy_result": 1, "abstract": [1, 2], "us": [1, 2, 4], "constuct": 1, "data": [1, 2], "function": [1, 2], "rais": [1, 2], "provid": [1, 2, 4], "point": 1, "thi": [1, 2, 4], "method": [1, 2], "overridden": 1, "subclass": [1, 2], "note": [1, 2], "The": [1, 2, 4], "locat": 1, "evaul": 1, "t": [1, 2], "0": [1, 2], "re": 1, "fluid": [1, 4], "move": 1, "over": 1, "time": [1, 2], "posit": 1, "numpoint": 1, "xlim": 1, "ylim": 1, "zlim": 1, "rho0": 1, "1": [1, 2], "c0": 1, "10": 1, "p0": 1, "graviti": [1, 4], "action": 1, "attribut": 1, "space": 1, "total": 1, "number": [1, 2], "2": 1, "rang": 1, "along": 1, "background": 1, "densiti": 1, "system": [1, 4], "speed": 1, "sound": 1, "pressur": 1, "acceler": 1, "cartesian": 1, "spheric": 1, "cylindr": 1, "enabl": 1, "prop": 1, "an": [1, 2, 4], "when": [1, 2], "fill": [1, 4], "default": 1, "dict": [1, 2, 3], "argument": 1, "ignor": 1, "indic": [1, 2], "els": [1, 3], "addit": [1, 2], "pass": [1, 2], "ad": [1, 2], "wasn": 1, "could": [1, 2], "construct": 1, "vol": 1, "mass": 1, "unassign": 1, "fix": 1, "c": [1, 2], "singl": [1, 2], "vertic": 1, "volum": 1, "cradded": 1, "viscos": 1, "artifici": 1, "contain": [1, 2], "invalid": [1, 2], "charact": 1, "from": [1, 2], "start": [1, 2, 4], "end": 1, "preserve_act": 1, "order": 1, "index": [1, 4], "inclus": 1, "exclus": 1, "after": 1, "its": 1, "support": [1, 4], "within": 1, "have": 1, "exampl": 1, "lattice_obj": 1, "geometry_obj": 1, "miss": 1, "calcul": 1, "find": [1, 4], "nearest": 1, "vertex": 1, "given": [1, 2], "gener": [1, 4], "list": [1, 2], "check": [1, 2], "preper": 1, "file": [1, 3], "get": [1, 2], "numpi": 1, "arrai": 1, "classmethod": [1, 2], "numx": 1, "numi": 1, "kwarg": 1, "2d": 1, "highest": 1, "lowest": 1, "keyword": 1, "uniform": 1, "numz": 1, "3d": [1, 4], "distanc": 1, "between": [1, 2], "measur": 1, "geometry_ivar": 1, "deltax": 1, "deltai": 1, "deltaz": 1, "geometr": 1, "shape": 1, "instanc": [1, 2], "minimum": 1, "box": 1, "maximum": [1, 2], "were": [1, 2], "exist": 1, "np": 1, "ndarrai": 1, "dtype": 1, "h": 1, "off": 1, "which": [1, 2], "ha": [1, 4], "greatest": 1, "neighbor": 1, "entir": 1, "limit": 1, "tupl": 1, "estim": 1, "size": 1, "averag": 1, "diamet": 1, "circumradiu": 1, "tetrahedron": 1, "part": 1, "mean": 1, "incid": 1, "cell": 1, "voxel": 1, "definit": 1, "mesh_obj": 1, "subdomain_fil": 1, "import": 1, "python": [1, 2, 4], "meshio": 1, "mesh": 1, "v1": 1, "descript": 1, "filenam": [1, 3], "indeci": 1, "width": 1, "height": 1, "colormap": 1, "titl": 1, "included_types_list": 1, "use_matplotlib": 1, "return_plotly_figur": 1, "plot": 1, "plotli": 1, "onli": [1, 2], "view": 1, "jupyt": 1, "notebook": [1, 4], "pixel": 1, "output": [1, 2], "matplotlib": 1, "inch": 1, "500": 1, "specif": 1, "plotly3": 1, "jet": 1, "blue": 1, "ylorrd": 1, "purd": 1, "bugn": 1, "ylorbr": 1, "pubugn": 1, "bupu": 1, "ylgnbu": 1, "pubu": 1, "gnbu": 1, "ylgn": 1, "green": 1, "red": 1, "grei": 1, "rdpu": 1, "orrd": 1, "purpl": 1, "orang": 1, "graph": 1, "describ": [1, 4], "includ": 1, "By": [1, 2], "displai": 1, "whether": [1, 2, 3], "figur": 1, "dictionari": [1, 2], "trace": 1, "layout": 1, "mai": 1, "edit": 1, "user": [1, 4], "proprti": 1, "preview": 1, "effect": 1, "read": 1, "gmsh": 1, "style": 1, "msh": 1, "domn": 1, "pull": 1, "smdl": 1, "txt": 1, "conain": 1, "fenic": 1, "dolfin": 1, "xml": 1, "assign": [1, 2], "identifi": [1, 2], "immobil": 1, "coverag": 1, "scope": 1, "accept": [1, 2], "doaminerror": 1, "met": 1, "": [1, 4], "formula": 1, "geo_namespac": 1, "combinatori": 1, "multipl": [1, 2], "boolean": 1, "logic": [1, 2], "geo1": 1, "geo2": 1, "geo3": 1, "namespac": [1, 2], "geometry1": 1, "geometry2": 1, "geometry3": 1, "found": [1, 2, 4], "on_boundari": 1, "coodin": 1, "edg": 1, "satisfi": 1, "geometi": 1, "ani": [1, 2, 4], "doe": 1, "tag": 1, "separ": 1, "mark": 1, "work": 1, "triangl": 1, "implement": [1, 2], "direct": 1, "modifi": 1, "u0": 1, "matrix": 1, "count": 1, "contian": 1, "place": 1, "scatter": 1, "randomli": 1, "center": 1, "two": [1, 2], "doesn": 1, "restrict": 1, "depend": 1, "radiu": 1, "length": 1, "delta": 1, "deltar": 1, "surfac": 1, "radial": 1, "skip_valid": 1, "arg": 1, "io": 1, "un": 1, "biochem": 1, "compon": 1, "befor": 1, "other": [1, 2], "combin": 1, "than": 1, "do": 1, "need": [1, 4], "particular": 1, "bound_cond": 1, "conidit": 1, "data_funct": 1, "scalar": 1, "you": [1, 4], "vari": 1, "input": 1, "your": [1, 4], "It": 1, "positon": 1, "toth": 1, "init_cond": 1, "fail": [1, 2], "make": 1, "sure": 1, "paramt": 1, "diffus": [1, 4], "util": 1, "stoichiometr": 1, "dependency_graph": 1, "timestep": 1, "exce": 1, "frequenc": 1, "ordereddict": 1, "form": [1, 4], "kei": [1, 2], "specifi": 1, "element": 1, "differ": [1, 2], "rname": [], "number_of_trajectori": [1, 2], "seed": [1, 2], "timeout": [1, 2], "number_of_thread": [1, 2], "debug_level": [1, 2], "debug": [1, 2], "profil": [1, 2], "how": [1, 2, 4], "mani": [1, 2], "trajectori": [1, 2], "should": [1, 2], "random": [1, 2], "second": [1, 2], "kill": 1, "upon": 1, "reach": 1, "thread": [1, 2], "level": [1, 2], "print": [1, 2], "out": [1, 4], "info": 1, "dure": [1, 2], "addtion": [1, 2], "perform": 1, "chosen": 1, "simplifi": 1, "format": 1, "later": [1, 2], "spatialpysolv": 1, "propens": 1, "intern": 1, "notat": 1, "output_interv": 1, "num_step": 1, "timestep_s": 1, "simlat": 1, "span": 1, "first": [1, 2], "zero": 1, "time_span": 1, "ssa": 1, "sdpd": [1, 4], "engin": 1, "non": 1, "tspan": 1, "evenli": 1, "sampl": 1, "popul": 1, "flatten": 1, "spatialpy_model": 1, "return_stochss_model": [1, 3], "convert": [1, 2, 3], "json": 1, "platform": 1, "directli": [1, 4], "understood": 1, "parent": 1, "call": [1, 2], "referenc": 1, "requir": 1, "outsid": 1, "reactant": 1, "product": 1, "propensity_funct": 1, "ode_propensity_funct": 1, "rate": 1, "restrict_to": 1, "conatain": 1, "neg": 1, "union": 1, "For": [1, 4], "zeroth": 1, "attempt": 1, "higher": 1, "error": 1, "consum": 1, "stoichiometri": 1, "would": 1, "r1": 1, "r2": 1, "event": 1, "same": 1, "custom": 1, "oper": [1, 2], "od": 1, "care": 1, "unit": 1, "about": 1, "execut": [1, 2], "NOT": 1, "both": [1, 4], "term": 1, "repres": 1, "independ": 1, "wa": 1, "impact": 1, "preserv": 1, "produc": 1, "particip": 1, "deprec": 1, "param": 1, "json_object": 1, "defer": 1, "species_map": 1, "parameter_map": 1, "chang": 1, "marat": 1, "urdm": 1, "folder_nam": 1, "write": 1, "csv": 1, "modelname_mesh": 1, "modelname_species_": 1, "column": 1, "n": 1, "vtk": 1, "written": 1, "current": [1, 2], "property_nam": 1, "timepoint": 1, "integ": 1, "1d": 1, "veloc": 1, "bvf_phi": 1, "fraction": 1, "across": 1, "concentr": 1, "retreiv": 1, "inform": [1, 2, 4], "raw": 1, "copy_numb": 1, "unabl": 1, "retriev": 1, "t_ndx": 1, "t_val": 1, "p_ndx": 1, "anim": 1, "t_ndx_list": 1, "f_durat": 1, "t_durat": 1, "300": 1, "6": 1, "4": 1, "8": 1, "indec": 1, "interv": 1, "durat": 1, "frame": [1, 4], "transit": 1, "5": 1, "show": 1, "instead": 1, "step_num": 1, "except": 1, "initailcondit": 1, "bass": 1, "messag": 1, "o": 1, "diffusion_coeffici": 1, "coeffic": 1, "coeffici": 1, "listoftyp": 1, "movement": 1, "setter": 1, "item": [1, 2], "iter": 1, "best": 1, "increment": [1, 2], "20": 1, "num_point": 1, "empti": [1, 2], "repeat": 1, "point1": 1, "normal": 1, "point2": 1, "point3": 1, "reflect": 1, "revers": 1, "around": 1, "arbitrari": 1, "plane": 1, "serv": 1, "vector": 1, "onc": 1, "wrap": 1, "prior": 1, "angl": 1, "rotat": 1, "basic": 1, "factor": 1, "scale": 1, "wrapper": 1, "translat": 1, "40": 1, "plot_arg": 1, "scatter_arg": 1, "multiple_graph": 1, "maplotlib": 1, "pyplot": 1, "subplot": 1, "dist": 1, "group": 1, "nrow": 1, "ncol": 1, "entri": 1, "plote": 1, "py": 1, "minim": 1, "legaci": 1, "reader": 1, "refer": 1, "http": [1, 4], "org": 1, "wp": 1, "upload": 1, "2015": 1, "04": 1, "pdf": 1, "arraid": 1, "ascii": 1, "blacklist": 2, "sanit": 2, "allow": 2, "pre": 2, "flight": 2, "syntax": 2, "well": 2, "manag": 2, "context": 2, "statement": 2, "expect": 2, "forward": 2, "ideal": 2, "univers": 2, "constructor": 2, "granular": 2, "bare": 2, "equival": 2, "trigger": 2, "substitut": 2, "convers": 2, "automat": 2, "correspond": 2, "getexpr_": 2, "nodetransform": 2, "ast": 2, "expres": 2, "spactialpi": 2, "node": 2, "visit_assign": 2, "visitor": 2, "origin": 2, "binop": 2, "boolop": 2, "binboolopop": 2, "otherwis": 2, "compar": 2, "unaryop": 2, "syntaxerror": 2, "imposs": 2, "convet": 2, "built": 2, "_ast": 2, "Not": 2, "noteq": 2, "mod": 2, "bitand": 2, "mult": 2, "pow": 2, "sub": 2, "div": 2, "floordiv": 2, "lt": 2, "lshift": 2, "lte": 2, "eq": 2, "gt": 2, "gte": 2, "rshift": 2, "matmult": 2, "bitxor": 2, "And": 2, "Or": 2, "bitor": 2, "so": 2, "far": 2, "ensur": 2, "pars": 2, "against": 2, "addition": 2, "reject": 2, "rvalu": 2, "new": 2, "duplic": 2, "overrid": 2, "handl": 2, "behavior": 2, "copi": 2, "rtype": 2, "present": 2, "caus": 2, "what": 2, "tree": 2, "super": 2, "nodevisitor": 2, "self": 2, "comparison": 2, "last": 2, "mathemat": 2, "right": 2, "visit": 2, "left": 2, "most": 2, "recent": 2, "append": [0, 1, 2], "token": 2, "alwai": 2, "hand": 2, "u": 2, "pop": 2, "process": 2, "assum": 2, "inherit": 2, "byte": 2, "ellipsi": 2, "nameconst": 2, "num": 2, "usub": 2, "invalid_nam": 2, "invalid_oper": 2, "is_valid": 2, "struct": 2, "infer": 2, "invalid_": 2, "verbos": 2, "gdbgui": 2, "debugg": 2, "symbol": 2, "hasn": 2, "happen": 2, "gprof": 2, "avail": [2, 4], "consol": 2, "seri": 2, "exceed": [], "packag": 4, "advect": 4, "problem": 4, "embed": 4, "lagrangian": 4, "dynam": 4, "intend": 4, "replac": 4, "pyurdm": 4, "softwar": 4, "github": 4, "com": 4, "featur": 4, "nsm": 4, "rdme": 4, "static": 4, "sssa": 4, "public": 4, "hybrid": 4, "smooth": 4, "dissip": 4, "algorithm": 4, "drawert": 4, "jacob": 4, "li": 4, "yi": 4, "petzold": 4, "www": 4, "sciencedirect": 4, "scienc": 4, "articl": 4, "pii": 4, "s0021999118307101": 4, "latest": 4, "version": 4, "pypi": 4, "code": 4, "licens": 4, "under": 4, "gnu": 4, "pleas": 4, "regist": 4, "develop": 4, "fund": 4, "nih": 4, "grant": 4, "2r01eb014877": 4, "continu": 4, "we": 4, "prove": 4, "our": 4, "short": 4, "registr": 4, "see": 4, "here": 4, "cylind": 4, "demo": 4, "physic": 4, "flow": 4, "weir": 4, "tracker": 4, "project": 4, "contact": 4, "main": 4, "author": 4, "dr": 4, "brian": 4, "question": 4, "suggest": 4, "subpackag": 4, "modul": 4, "content": 4, "search": 4, "page": 4, "allow_all_typ": 1}, "objects": {"": [[0, 0, 0, "-", "spatialpy"]], "spatialpy": [[1, 0, 0, "-", "core"], [2, 0, 0, "-", "solvers"], [3, 0, 0, "-", "stochss"]], "spatialpy.core": [[1, 1, 1, "", "BoundaryCondition"], [1, 3, 1, "", "BoundaryConditionError"], [1, 1, 1, "", "CartesianLattice"], [1, 1, 1, "", "CombinatoryGeometry"], [1, 1, 1, "", "CylindricalLattice"], [1, 1, 1, "", "DataFunction"], [1, 3, 1, "", "DataFunctionError"], [1, 1, 1, "", "Domain"], [1, 3, 1, "", "DomainError"], [1, 1, 1, "", "Geometry"], [1, 1, 1, "", "GeometryAll"], [1, 3, 1, "", "GeometryError"], [1, 1, 1, "", "GeometryExterior"], [1, 1, 1, "", "GeometryInterior"], [1, 1, 1, "", "InitialCondition"], [1, 3, 1, "", "InitialConditionError"], [1, 3, 1, "", "LatticeError"], [1, 1, 1, "", "MeshIOLattice"], [1, 1, 1, "", "Model"], [1, 3, 1, "", "ModelError"], [1, 1, 1, "", "Parameter"], [1, 3, 1, "", "ParameterError"], [1, 1, 1, "", "PlaceInitialCondition"], [1, 1, 1, "", "Reaction"], [1, 3, 1, "", "ReactionError"], [1, 1, 1, "", "ReflectionTransformation"], [1, 1, 1, "", "Result"], [1, 3, 1, "", "ResultError"], [1, 1, 1, "", "RotationTransformation"], [1, 1, 1, "", "ScalingTransformation"], [1, 1, 1, "", "ScatterInitialCondition"], [1, 3, 1, "", "SimulationError"], [1, 3, 1, "", "SimulationTimeout"], [1, 1, 1, "", "Species"], [1, 3, 1, "", "SpeciesError"], [1, 1, 1, "", "SphericalLattice"], [1, 1, 1, "", "StochSSLattice"], [1, 1, 1, "", "TimeSpan"], [1, 3, 1, "", "TimespanError"], [1, 1, 1, "", "Transformation"], [1, 3, 1, "", "TransformationError"], [1, 1, 1, "", "TranslationTransformation"], [1, 1, 1, "", "UniformInitialCondition"], [1, 1, 1, "", "VTKReader"], [1, 3, 1, "", "VTKReaderError"], [1, 3, 1, "", "VTKReaderIOError"], [1, 1, 1, "", "Visualization"], [1, 3, 1, "", "VisualizationError"], [1, 1, 1, "", "XMLMeshLattice"], [1, 0, 0, "-", "boundarycondition"], [1, 0, 0, "-", "cleanup"], [1, 5, 1, "", "cleanup_build_files"], [1, 5, 1, "", "cleanup_core_files"], [1, 5, 1, "", "cleanup_result_files"], [1, 5, 1, "", "cleanup_tempfiles"], [1, 0, 0, "-", "datafunction"], [1, 0, 0, "-", "domain"], [1, 5, 1, "", "export_StochSS"], [1, 0, 0, "-", "geometry"], [1, 0, 0, "-", "initialcondition"], [1, 0, 0, "-", "lattice"], [1, 0, 0, "-", "model"], [1, 0, 0, "-", "parameter"], [1, 0, 0, "-", "reaction"], [1, 0, 0, "-", "result"], [1, 0, 0, "-", "spatialpyerror"], [1, 0, 0, "-", "species"], [1, 0, 0, "-", "timespan"], [1, 0, 0, "-", "transformation"], [1, 0, 0, "-", "visualization"], [1, 0, 0, "-", "vtkreader"]], "spatialpy.core.BoundaryCondition": [[1, 2, 1, "", "expression"]], "spatialpy.core.CartesianLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.CombinatoryGeometry": [[1, 2, 1, "", "inside"], [1, 2, 1, "", "validate"]], "spatialpy.core.CylindricalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.DataFunction": [[1, 2, 1, "", "map"]], "spatialpy.core.Domain": [[1, 2, 1, "", "add_fill_action"], [1, 2, 1, "", "add_point"], [1, 2, 1, "", "add_remove_action"], [1, 2, 1, "", "add_set_action"], [1, 2, 1, "", "apply_actions"], [1, 2, 1, "", "apply_fill_action"], [1, 2, 1, "", "apply_remove_action"], [1, 2, 1, "", "apply_set_action"], [1, 2, 1, "", "calculate_vol"], [1, 2, 1, "", "closest_vertex"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "coordinates"], [1, 2, 1, "", "create_2D_domain"], [1, 2, 1, "", "create_3D_domain"], [1, 2, 1, "", "distance_between_2_vertices"], [1, 2, 1, "", "fill_with_particles"], [1, 2, 1, "", "find_boundary_points"], [1, 2, 1, "", "find_h"], [1, 2, 1, "", "get_bounding_box"], [1, 2, 1, "", "get_domain_size"], [1, 2, 1, "", "get_num_voxels"], [1, 2, 1, "", "get_type_def"], [1, 2, 1, "", "get_vol"], [1, 2, 1, "", "import_meshio_object"], [1, 2, 1, "", "plot_types"], [1, 2, 1, "", "preview_actions"], [1, 2, 1, "", "read_msh_file"], [1, 2, 1, "", "read_stochss_domain"], [1, 2, 1, "", "read_stochss_subdomain_file"], [1, 2, 1, "", "read_xml_mesh"], [1, 2, 1, "", "set_properties"], [1, 2, 1, "", "validate_action"]], "spatialpy.core.Geometry": [[1, 2, 1, "", "inside"]], "spatialpy.core.GeometryAll": [[1, 2, 1, "", "inside"]], "spatialpy.core.GeometryExterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.GeometryInterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.InitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.MeshIOLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.Model": [[1, 2, 1, "", "add"], [1, 2, 1, "", "add_boundary_condition"], [1, 2, 1, "", "add_data_function"], [1, 2, 1, "", "add_domain"], [1, 2, 1, "", "add_initial_condition"], [1, 2, 1, "", "add_parameter"], [1, 2, 1, "", "add_reaction"], [1, 2, 1, "", "add_species"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "delete_all_boundary_conditions"], [1, 2, 1, "", "delete_all_data_functions"], [1, 2, 1, "", "delete_all_initial_conditions"], [1, 2, 1, "", "delete_all_parameters"], [1, 2, 1, "", "delete_all_reactions"], [1, 2, 1, "", "delete_all_species"], [1, 2, 1, "", "delete_boundary_condition"], [1, 2, 1, "", "delete_data_function"], [1, 2, 1, "", "delete_initial_condition"], [1, 2, 1, "", "delete_parameter"], [1, 2, 1, "", "delete_reaction"], [1, 2, 1, "", "delete_species"], [1, 2, 1, "", "get_all_boundary_conditions"], [1, 2, 1, "", "get_all_data_functions"], [1, 2, 1, "", "get_all_initial_conditions"], [1, 2, 1, "", "get_all_parameters"], [1, 2, 1, "", "get_all_reactions"], [1, 2, 1, "", "get_all_species"], [1, 2, 1, "", "get_data_function"], [1, 2, 1, "", "get_element"], [1, 2, 1, "", "get_num_reactions"], [1, 2, 1, "", "get_num_species"], [1, 2, 1, "", "get_parameter"], [1, 2, 1, "", "get_reaction"], [1, 2, 1, "", "get_species"], [1, 4, 1, "", "reserved_names"], [1, 2, 1, "", "run"], [1, 2, 1, "", "sanitized_data_function_names"], [1, 2, 1, "", "sanitized_parameter_names"], [1, 2, 1, "", "sanitized_species_names"], [1, 2, 1, "", "set_timesteps"], [1, 4, 1, "", "special_characters"], [1, 2, 1, "", "timespan"], [1, 2, 1, "", "update_namespace"]], "spatialpy.core.Parameter": [[1, 2, 1, "", "validate"]], "spatialpy.core.PlaceInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.Reaction": [[1, 2, 1, "", "add_product"], [1, 2, 1, "", "add_reactant"], [1, 2, 1, "", "annotate"], [1, 2, 1, "", "from_json"], [1, 2, 1, "", "initialize"], [1, 2, 1, "", "sanitized_propensity_function"], [1, 2, 1, "", "set_annotation"], [1, 2, 1, "", "set_propensities"], [1, 2, 1, "", "set_rate"], [1, 2, 1, "", "to_dict"], [1, 2, 1, "", "validate"]], "spatialpy.core.ReflectionTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"]], "spatialpy.core.Result": [[1, 2, 1, "", "append"], [1, 2, 1, "", "export_to_csv"], [1, 2, 1, "", "get_property"], [1, 2, 1, "", "get_species"], [1, 2, 1, "", "get_timespan"], [1, 2, 1, "", "plot_property"], [1, 2, 1, "", "plot_species"], [1, 2, 1, "", "read_step"]], "spatialpy.core.RotationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.ScalingTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.ScatterInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.Species": [[1, 2, 1, "", "set_diffusion_coefficient"], [1, 2, 1, "", "validate"]], "spatialpy.core.SphericalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.StochSSLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.TimeSpan": [[1, 2, 1, "", "arange"], [1, 2, 1, "", "linspace"], [1, 2, 1, "", "validate"]], "spatialpy.core.Transformation": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "inside"], [1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.TranslationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.UniformInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.VTKReader": [[1, 2, 1, "", "get_array_name"], [1, 2, 1, "", "get_arrays"], [1, 2, 1, "", "get_num_points"], [1, 2, 1, "", "get_points"], [1, 2, 1, "", "read_file"], [1, 2, 1, "", "set_filename"]], "spatialpy.core.Visualization": [[1, 4, 1, "", "MPL_HEIGHT"], [1, 4, 1, "", "MPL_SIZE"], [1, 4, 1, "", "MPL_WIDTH"], [1, 2, 1, "", "plot_scatter"]], "spatialpy.core.XMLMeshLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.boundarycondition": [[1, 1, 1, "", "BoundaryCondition"]], "spatialpy.core.boundarycondition.BoundaryCondition": [[1, 2, 1, "", "expression"]], "spatialpy.core.cleanup": [[1, 5, 1, "", "cleanup_build_files"], [1, 5, 1, "", "cleanup_core_files"], [1, 5, 1, "", "cleanup_result_files"], [1, 5, 1, "", "cleanup_tempfiles"]], "spatialpy.core.datafunction": [[1, 1, 1, "", "DataFunction"]], "spatialpy.core.datafunction.DataFunction": [[1, 2, 1, "", "map"]], "spatialpy.core.domain": [[1, 1, 1, "", "Domain"]], "spatialpy.core.domain.Domain": [[1, 2, 1, "", "add_fill_action"], [1, 2, 1, "", "add_point"], [1, 2, 1, "", "add_remove_action"], [1, 2, 1, "", "add_set_action"], [1, 2, 1, "", "apply_actions"], [1, 2, 1, "", "apply_fill_action"], [1, 2, 1, "", "apply_remove_action"], [1, 2, 1, "", "apply_set_action"], [1, 2, 1, "", "calculate_vol"], [1, 2, 1, "", "closest_vertex"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "coordinates"], [1, 2, 1, "", "create_2D_domain"], [1, 2, 1, "", "create_3D_domain"], [1, 2, 1, "", "distance_between_2_vertices"], [1, 2, 1, "", "fill_with_particles"], [1, 2, 1, "", "find_boundary_points"], [1, 2, 1, "", "find_h"], [1, 2, 1, "", "get_bounding_box"], [1, 2, 1, "", "get_domain_size"], [1, 2, 1, "", "get_num_voxels"], [1, 2, 1, "", "get_type_def"], [1, 2, 1, "", "get_vol"], [1, 2, 1, "", "import_meshio_object"], [1, 2, 1, "", "plot_types"], [1, 2, 1, "", "preview_actions"], [1, 2, 1, "", "read_msh_file"], [1, 2, 1, "", "read_stochss_domain"], [1, 2, 1, "", "read_stochss_subdomain_file"], [1, 2, 1, "", "read_xml_mesh"], [1, 2, 1, "", "set_properties"], [1, 2, 1, "", "validate_action"]], "spatialpy.core.geometry": [[1, 1, 1, "", "CombinatoryGeometry"], [1, 1, 1, "", "Geometry"], [1, 1, 1, "", "GeometryAll"], [1, 1, 1, "", "GeometryExterior"], [1, 1, 1, "", "GeometryInterior"]], "spatialpy.core.geometry.CombinatoryGeometry": [[1, 2, 1, "", "inside"], [1, 2, 1, "", "validate"]], "spatialpy.core.geometry.Geometry": [[1, 2, 1, "", "inside"]], "spatialpy.core.geometry.GeometryAll": [[1, 2, 1, "", "inside"]], "spatialpy.core.geometry.GeometryExterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.geometry.GeometryInterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.initialcondition": [[1, 1, 1, "", "InitialCondition"], [1, 1, 1, "", "PlaceInitialCondition"], [1, 1, 1, "", "ScatterInitialCondition"], [1, 1, 1, "", "UniformInitialCondition"]], "spatialpy.core.initialcondition.InitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.initialcondition.PlaceInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.initialcondition.ScatterInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.initialcondition.UniformInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.lattice": [[1, 1, 1, "", "CartesianLattice"], [1, 1, 1, "", "CylindricalLattice"], [1, 1, 1, "", "Lattice"], [1, 1, 1, "", "MeshIOLattice"], [1, 1, 1, "", "SphericalLattice"], [1, 1, 1, "", "StochSSLattice"], [1, 1, 1, "", "XMLMeshLattice"]], "spatialpy.core.lattice.CartesianLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.CylindricalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.Lattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.MeshIOLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.SphericalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.StochSSLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.XMLMeshLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.model": [[1, 1, 1, "", "Model"], [1, 5, 1, "", "export_StochSS"]], "spatialpy.core.model.Model": [[1, 2, 1, "", "add"], [1, 2, 1, "", "add_boundary_condition"], [1, 2, 1, "", "add_data_function"], [1, 2, 1, "", "add_domain"], [1, 2, 1, "", "add_initial_condition"], [1, 2, 1, "", "add_parameter"], [1, 2, 1, "", "add_reaction"], [1, 2, 1, "", "add_species"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "delete_all_boundary_conditions"], [1, 2, 1, "", "delete_all_data_functions"], [1, 2, 1, "", "delete_all_initial_conditions"], [1, 2, 1, "", "delete_all_parameters"], [1, 2, 1, "", "delete_all_reactions"], [1, 2, 1, "", "delete_all_species"], [1, 2, 1, "", "delete_boundary_condition"], [1, 2, 1, "", "delete_data_function"], [1, 2, 1, "", "delete_initial_condition"], [1, 2, 1, "", "delete_parameter"], [1, 2, 1, "", "delete_reaction"], [1, 2, 1, "", "delete_species"], [1, 2, 1, "", "get_all_boundary_conditions"], [1, 2, 1, "", "get_all_data_functions"], [1, 2, 1, "", "get_all_initial_conditions"], [1, 2, 1, "", "get_all_parameters"], [1, 2, 1, "", "get_all_reactions"], [1, 2, 1, "", "get_all_species"], [1, 2, 1, "", "get_data_function"], [1, 2, 1, "", "get_element"], [1, 2, 1, "", "get_num_reactions"], [1, 2, 1, "", "get_num_species"], [1, 2, 1, "", "get_parameter"], [1, 2, 1, "", "get_reaction"], [1, 2, 1, "", "get_species"], [1, 4, 1, "", "reserved_names"], [1, 2, 1, "", "run"], [1, 2, 1, "", "sanitized_data_function_names"], [1, 2, 1, "", "sanitized_parameter_names"], [1, 2, 1, "", "sanitized_species_names"], [1, 2, 1, "", "set_timesteps"], [1, 4, 1, "", "special_characters"], [1, 2, 1, "", "timespan"], [1, 2, 1, "", "update_namespace"]], "spatialpy.core.parameter": [[1, 1, 1, "", "Parameter"]], "spatialpy.core.parameter.Parameter": [[1, 2, 1, "", "validate"]], "spatialpy.core.reaction": [[1, 1, 1, "", "Reaction"]], "spatialpy.core.reaction.Reaction": [[1, 2, 1, "", "add_product"], [1, 2, 1, "", "add_reactant"], [1, 2, 1, "", "annotate"], [1, 2, 1, "", "from_json"], [1, 2, 1, "", "initialize"], [1, 2, 1, "", "sanitized_propensity_function"], [1, 2, 1, "", "set_annotation"], [1, 2, 1, "", "set_propensities"], [1, 2, 1, "", "set_rate"], [1, 2, 1, "", "to_dict"], [1, 2, 1, "", "validate"]], "spatialpy.core.result": [[1, 1, 1, "", "Result"]], "spatialpy.core.result.Result": [[1, 2, 1, "", "append"], [1, 2, 1, "", "export_to_csv"], [1, 2, 1, "", "get_property"], [1, 2, 1, "", "get_species"], [1, 2, 1, "", "get_timespan"], [1, 2, 1, "", "plot_property"], [1, 2, 1, "", "plot_species"], [1, 2, 1, "", "read_step"]], "spatialpy.core.spatialpyerror": [[1, 3, 1, "", "BoundaryConditionError"], [1, 3, 1, "", "DataFunctionError"], [1, 3, 1, "", "DomainError"], [1, 3, 1, "", "GeometryError"], [1, 3, 1, "", "InitialConditionError"], [1, 3, 1, "", "LatticeError"], [1, 3, 1, "", "ModelError"], [1, 3, 1, "", "ParameterError"], [1, 3, 1, "", "ReactionError"], [1, 3, 1, "", "ResultError"], [1, 3, 1, "", "SimulationError"], [1, 3, 1, "", "SimulationTimeout"], [1, 3, 1, "", "SpeciesError"], [1, 3, 1, "", "TimespanError"], [1, 3, 1, "", "TransformationError"], [1, 3, 1, "", "VTKReaderError"], [1, 3, 1, "", "VTKReaderIOError"], [1, 3, 1, "", "VisualizationError"]], "spatialpy.core.species": [[1, 1, 1, "", "Species"]], "spatialpy.core.species.Species": [[1, 2, 1, "", "set_diffusion_coefficient"], [1, 2, 1, "", "validate"]], "spatialpy.core.timespan": [[1, 1, 1, "", "TimeSpan"]], "spatialpy.core.timespan.TimeSpan": [[1, 2, 1, "", "arange"], [1, 2, 1, "", "linspace"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation": [[1, 1, 1, "", "ReflectionTransformation"], [1, 1, 1, "", "RotationTransformation"], [1, 1, 1, "", "ScalingTransformation"], [1, 1, 1, "", "Transformation"], [1, 1, 1, "", "TranslationTransformation"]], "spatialpy.core.transformation.ReflectionTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"]], "spatialpy.core.transformation.RotationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation.ScalingTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation.Transformation": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "inside"], [1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation.TranslationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.visualization": [[1, 1, 1, "", "Visualization"]], "spatialpy.core.visualization.Visualization": [[1, 4, 1, "", "MPL_HEIGHT"], [1, 4, 1, "", "MPL_SIZE"], [1, 4, 1, "", "MPL_WIDTH"], [1, 2, 1, "", "plot_scatter"]], "spatialpy.core.vtkreader": [[1, 1, 1, "", "VTKReader"]], "spatialpy.core.vtkreader.VTKReader": [[1, 2, 1, "", "get_array_name"], [1, 2, 1, "", "get_arrays"], [1, 2, 1, "", "get_num_points"], [1, 2, 1, "", "get_points"], [1, 2, 1, "", "read_file"], [1, 2, 1, "", "set_filename"]], "spatialpy.solvers": [[2, 0, 0, "-", "build_expression"], [2, 0, 0, "-", "solver"]], "spatialpy.solvers.build_expression": [[2, 1, 1, "", "BuildExpression"], [2, 1, 1, "", "CppConverter"], [2, 1, 1, "", "ExpressionConverter"], [2, 1, 1, "", "ExpressionResults"], [2, 1, 1, "", "PythonConverter"]], "spatialpy.solvers.build_expression.BuildExpression": [[2, 1, 1, "", "ValidationVisitor"], [2, 2, 1, "", "getexpr_cpp"], [2, 2, 1, "", "getexpr_python"], [2, 2, 1, "", "map_operator"], [2, 4, 1, "", "operator_map"], [2, 2, 1, "", "validate"], [2, 2, 1, "", "with_blacklist"], [2, 2, 1, "", "with_namespace"]], "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor": [[2, 2, 1, "", "visit_Assign"], [2, 2, 1, "", "visit_BinOp"], [2, 2, 1, "", "visit_BoolOp"], [2, 2, 1, "", "visit_Call"], [2, 2, 1, "", "visit_Compare"], [2, 2, 1, "", "visit_Name"], [2, 2, 1, "", "visit_UnaryOp"]], "spatialpy.solvers.build_expression.CppConverter": [[2, 1, 1, "", "CppExpressionTransformer"], [2, 2, 1, "", "get_str"], [2, 2, 1, "", "visit_And"], [2, 2, 1, "", "visit_Or"]], "spatialpy.solvers.build_expression.CppConverter.CppExpressionTransformer": [[2, 2, 1, "", "visit_BinOp"]], "spatialpy.solvers.build_expression.ExpressionConverter": [[2, 2, 1, "", "convert_str"], [2, 2, 1, "", "get_str"], [2, 2, 1, "", "parse_comparison"], [2, 2, 1, "", "parse_logical"], [2, 2, 1, "", "parse_operator"], [2, 2, 1, "", "visit_Add"], [2, 2, 1, "", "visit_BinOp"], [2, 2, 1, "", "visit_BoolOp"], [2, 2, 1, "", "visit_Bytes"], [2, 2, 1, "", "visit_Call"], [2, 2, 1, "", "visit_Compare"], [2, 2, 1, "", "visit_Constant"], [2, 2, 1, "", "visit_Div"], [2, 2, 1, "", "visit_Ellipsis"], [2, 2, 1, "", "visit_Eq"], [2, 2, 1, "", "visit_Gt"], [2, 2, 1, "", "visit_GtE"], [2, 2, 1, "", "visit_Lt"], [2, 2, 1, "", "visit_LtE"], [2, 2, 1, "", "visit_Mult"], [2, 2, 1, "", "visit_Name"], [2, 2, 1, "", "visit_NameConstant"], [2, 2, 1, "", "visit_NotEq"], [2, 2, 1, "", "visit_Num"], [2, 2, 1, "", "visit_Pow"], [2, 2, 1, "", "visit_Str"], [2, 2, 1, "", "visit_Sub"], [2, 2, 1, "", "visit_USub"], [2, 2, 1, "", "visit_UnaryOp"]], "spatialpy.solvers.build_expression.PythonConverter": [[2, 2, 1, "", "visit_And"], [2, 2, 1, "", "visit_Or"]], "spatialpy.solvers.solver": [[2, 1, 1, "", "Solver"]], "spatialpy.solvers.solver.Solver": [[2, 2, 1, "", "compile"], [2, 2, 1, "", "run"]], "spatialpy.stochss": [[3, 0, 0, "-", "stochss_export"]], "spatialpy.stochss.stochss_export": [[3, 5, 1, "", "export"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:exception", "4": "py:attribute", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "exception", "Python exception"], "4": ["py", "attribute", "Python attribute"], "5": ["py", "function", "Python function"]}, "titleterms": {"spatialpi": [0, 1, 2, 3, 4], "packag": [0, 1, 2, 3], "subpackag": 0, "modul": [0, 1, 2, 3], "content": [0, 1, 2, 3], "core": 1, "submodul": [1, 2, 3], "boundarycondit": 1, "cleanup": 1, "datafunct": 1, "domain": 1, "geometri": 1, "initialcondit": 1, "lattic": 1, "model": 1, "paramet": 1, "reaction": 1, "result": 1, "spatialpyerror": 1, "speci": 1, "timespan": 1, "transform": 1, "visual": 1, "vtkreader": 1, "solver": 2, "build_express": 2, "stochss": 3, "stochss_export": 3, "document": 4, "1": 4, "2": 4, "get": 4, "copi": 4, "exampl": 4, "report": 4, "issu": 4, "api": 4, "refer": 4, "indic": 4, "tabl": 4, "3": [], "0": []}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx.ext.todo": 2, "sphinx": 57}, "alltitles": {"spatialpy package": [[0, "spatialpy-package"]], "Subpackages": [[0, "subpackages"]], "Module contents": [[0, "module-spatialpy"], [1, "module-spatialpy.core"], [2, "module-spatialpy.solvers"], [3, "module-spatialpy.stochss"]], "spatialpy.core package": [[1, "spatialpy-core-package"]], "Submodules": [[1, "submodules"], [2, "submodules"], [3, "submodules"]], "spatialpy.core.boundarycondition module": [[1, "module-spatialpy.core.boundarycondition"]], "spatialpy.core.cleanup module": [[1, "module-spatialpy.core.cleanup"]], "spatialpy.core.datafunction module": [[1, "module-spatialpy.core.datafunction"]], "spatialpy.core.domain module": [[1, "module-spatialpy.core.domain"]], "spatialpy.core.geometry module": [[1, "module-spatialpy.core.geometry"]], "spatialpy.core.initialcondition module": [[1, "module-spatialpy.core.initialcondition"]], "spatialpy.core.lattice module": [[1, "module-spatialpy.core.lattice"]], "spatialpy.core.model module": [[1, "module-spatialpy.core.model"]], "spatialpy.core.parameter module": [[1, "module-spatialpy.core.parameter"]], "spatialpy.core.reaction module": [[1, "module-spatialpy.core.reaction"]], "spatialpy.core.result module": [[1, "module-spatialpy.core.result"]], "spatialpy.core.spatialpyerror module": [[1, "module-spatialpy.core.spatialpyerror"]], "spatialpy.core.species module": [[1, "module-spatialpy.core.species"]], "spatialpy.core.timespan module": [[1, "module-spatialpy.core.timespan"]], "spatialpy.core.transformation module": [[1, "module-spatialpy.core.transformation"]], "spatialpy.core.visualization module": [[1, "module-spatialpy.core.visualization"]], "spatialpy.core.vtkreader module": [[1, "module-spatialpy.core.vtkreader"]], "spatialpy.solvers package": [[2, "spatialpy-solvers-package"]], "spatialpy.solvers.build_expression module": [[2, "module-spatialpy.solvers.build_expression"]], "spatialpy.solvers.solver module": [[2, "module-spatialpy.solvers.solver"]], "spatialpy.stochss package": [[3, "spatialpy-stochss-package"]], "spatialpy.stochss.stochss_export module": [[3, "module-spatialpy.stochss.stochss_export"]], "Documentation for SpatialPy 1.2.2": [[4, "documentation-for-spatialpy-release"]], "Getting a copy of SpatialPy": [[4, "getting-a-copy-of-spatialpy"]], "Examples": [[4, "examples"]], "Reporting Issues": [[4, "reporting-issues"]], "Documentation": [[4, "documentation"]], "API reference": [[4, null]], "Indices and tables": [[4, "indices-and-tables"]]}, "indexentries": {"module": [[0, "module-spatialpy"], [1, "module-spatialpy.core"], [1, "module-spatialpy.core.boundarycondition"], [1, "module-spatialpy.core.cleanup"], [1, "module-spatialpy.core.datafunction"], [1, "module-spatialpy.core.domain"], [1, "module-spatialpy.core.geometry"], [1, "module-spatialpy.core.initialcondition"], [1, "module-spatialpy.core.lattice"], [1, "module-spatialpy.core.model"], [1, "module-spatialpy.core.parameter"], [1, "module-spatialpy.core.reaction"], [1, "module-spatialpy.core.result"], [1, "module-spatialpy.core.spatialpyerror"], [1, "module-spatialpy.core.species"], [1, "module-spatialpy.core.timespan"], [1, "module-spatialpy.core.transformation"], [1, "module-spatialpy.core.visualization"], [1, "module-spatialpy.core.vtkreader"], [2, "module-spatialpy.solvers"], [2, "module-spatialpy.solvers.build_expression"], [2, "module-spatialpy.solvers.solver"], [3, "module-spatialpy.stochss"], [3, "module-spatialpy.stochss.stochss_export"]], "spatialpy": [[0, "module-spatialpy"]], "boundarycondition (class in spatialpy.core)": [[1, "spatialpy.core.BoundaryCondition"]], "boundarycondition (class in spatialpy.core.boundarycondition)": [[1, "spatialpy.core.boundarycondition.BoundaryCondition"]], "boundaryconditionerror": [[1, "spatialpy.core.BoundaryConditionError"], [1, "spatialpy.core.spatialpyerror.BoundaryConditionError"]], "cartesianlattice (class in spatialpy.core)": [[1, "spatialpy.core.CartesianLattice"]], "cartesianlattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.CartesianLattice"]], "combinatorygeometry (class in spatialpy.core)": [[1, "spatialpy.core.CombinatoryGeometry"]], "combinatorygeometry (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.CombinatoryGeometry"]], "cylindricallattice (class in spatialpy.core)": [[1, "spatialpy.core.CylindricalLattice"]], "cylindricallattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.CylindricalLattice"]], "datafunction (class in spatialpy.core)": [[1, "spatialpy.core.DataFunction"]], "datafunction (class in spatialpy.core.datafunction)": [[1, "spatialpy.core.datafunction.DataFunction"]], "datafunctionerror": [[1, "spatialpy.core.DataFunctionError"], [1, "spatialpy.core.spatialpyerror.DataFunctionError"]], "domain (class in spatialpy.core)": [[1, "spatialpy.core.Domain"]], "domain (class in spatialpy.core.domain)": [[1, "spatialpy.core.domain.Domain"]], "domainerror": [[1, "spatialpy.core.DomainError"], [1, "spatialpy.core.spatialpyerror.DomainError"]], "geometry (class in spatialpy.core)": [[1, "spatialpy.core.Geometry"]], "geometry (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.Geometry"]], "geometryall (class in spatialpy.core)": [[1, "spatialpy.core.GeometryAll"]], "geometryall (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.GeometryAll"]], "geometryerror": [[1, "spatialpy.core.GeometryError"], [1, "spatialpy.core.spatialpyerror.GeometryError"]], "geometryexterior (class in spatialpy.core)": [[1, "spatialpy.core.GeometryExterior"]], "geometryexterior (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.GeometryExterior"]], "geometryinterior (class in spatialpy.core)": [[1, "spatialpy.core.GeometryInterior"]], "geometryinterior (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.GeometryInterior"]], "initialcondition (class in spatialpy.core)": [[1, "spatialpy.core.InitialCondition"]], "initialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.InitialCondition"]], "initialconditionerror": [[1, "spatialpy.core.InitialConditionError"], [1, "spatialpy.core.spatialpyerror.InitialConditionError"]], "lattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.Lattice"]], "latticeerror": [[1, "spatialpy.core.LatticeError"], [1, "spatialpy.core.spatialpyerror.LatticeError"]], "mpl_height (spatialpy.core.visualization attribute)": [[1, "spatialpy.core.Visualization.MPL_HEIGHT"]], "mpl_height (spatialpy.core.visualization.visualization attribute)": [[1, "spatialpy.core.visualization.Visualization.MPL_HEIGHT"]], "mpl_size (spatialpy.core.visualization attribute)": [[1, "spatialpy.core.Visualization.MPL_SIZE"]], "mpl_size (spatialpy.core.visualization.visualization attribute)": [[1, "spatialpy.core.visualization.Visualization.MPL_SIZE"]], "mpl_width (spatialpy.core.visualization attribute)": [[1, "spatialpy.core.Visualization.MPL_WIDTH"]], "mpl_width (spatialpy.core.visualization.visualization attribute)": [[1, "spatialpy.core.visualization.Visualization.MPL_WIDTH"]], "meshiolattice (class in spatialpy.core)": [[1, "spatialpy.core.MeshIOLattice"]], "meshiolattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.MeshIOLattice"]], "model (class in spatialpy.core)": [[1, "spatialpy.core.Model"]], "model (class in spatialpy.core.model)": [[1, "spatialpy.core.model.Model"]], "modelerror": [[1, "spatialpy.core.ModelError"], [1, "spatialpy.core.spatialpyerror.ModelError"]], "parameter (class in spatialpy.core)": [[1, "spatialpy.core.Parameter"]], "parameter (class in spatialpy.core.parameter)": [[1, "spatialpy.core.parameter.Parameter"]], "parametererror": [[1, "spatialpy.core.ParameterError"], [1, "spatialpy.core.spatialpyerror.ParameterError"]], "placeinitialcondition (class in spatialpy.core)": [[1, "spatialpy.core.PlaceInitialCondition"]], "placeinitialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.PlaceInitialCondition"]], "reaction (class in spatialpy.core)": [[1, "spatialpy.core.Reaction"]], "reaction (class in spatialpy.core.reaction)": [[1, "spatialpy.core.reaction.Reaction"]], "reactionerror": [[1, "spatialpy.core.ReactionError"], [1, "spatialpy.core.spatialpyerror.ReactionError"]], "reflectiontransformation (class in spatialpy.core)": [[1, "spatialpy.core.ReflectionTransformation"]], "reflectiontransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.ReflectionTransformation"]], "result (class in spatialpy.core)": [[1, "spatialpy.core.Result"]], "result (class in spatialpy.core.result)": [[1, "spatialpy.core.result.Result"]], "resulterror": [[1, "spatialpy.core.ResultError"], [1, "spatialpy.core.spatialpyerror.ResultError"]], "rotationtransformation (class in spatialpy.core)": [[1, "spatialpy.core.RotationTransformation"]], "rotationtransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.RotationTransformation"]], "scalingtransformation (class in spatialpy.core)": [[1, "spatialpy.core.ScalingTransformation"]], "scalingtransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.ScalingTransformation"]], "scatterinitialcondition (class in spatialpy.core)": [[1, "spatialpy.core.ScatterInitialCondition"]], "scatterinitialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.ScatterInitialCondition"]], "simulationerror": [[1, "spatialpy.core.SimulationError"], [1, "spatialpy.core.spatialpyerror.SimulationError"]], "simulationtimeout": [[1, "spatialpy.core.SimulationTimeout"], [1, "spatialpy.core.spatialpyerror.SimulationTimeout"]], "species (class in spatialpy.core)": [[1, "spatialpy.core.Species"]], "species (class in spatialpy.core.species)": [[1, "spatialpy.core.species.Species"]], "specieserror": [[1, "spatialpy.core.SpeciesError"], [1, "spatialpy.core.spatialpyerror.SpeciesError"]], "sphericallattice (class in spatialpy.core)": [[1, "spatialpy.core.SphericalLattice"]], "sphericallattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.SphericalLattice"]], "stochsslattice (class in spatialpy.core)": [[1, "spatialpy.core.StochSSLattice"]], "stochsslattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.StochSSLattice"]], "timespan (class in spatialpy.core)": [[1, "spatialpy.core.TimeSpan"]], "timespan (class in spatialpy.core.timespan)": [[1, "spatialpy.core.timespan.TimeSpan"]], "timespanerror": [[1, "spatialpy.core.TimespanError"], [1, "spatialpy.core.spatialpyerror.TimespanError"]], "transformation (class in spatialpy.core)": [[1, "spatialpy.core.Transformation"]], "transformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.Transformation"]], "transformationerror": [[1, "spatialpy.core.TransformationError"], [1, "spatialpy.core.spatialpyerror.TransformationError"]], "translationtransformation (class in spatialpy.core)": [[1, "spatialpy.core.TranslationTransformation"]], "translationtransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.TranslationTransformation"]], "uniforminitialcondition (class in spatialpy.core)": [[1, "spatialpy.core.UniformInitialCondition"]], "uniforminitialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.UniformInitialCondition"]], "vtkreader (class in spatialpy.core)": [[1, "spatialpy.core.VTKReader"]], "vtkreader (class in spatialpy.core.vtkreader)": [[1, "spatialpy.core.vtkreader.VTKReader"]], "vtkreadererror": [[1, "spatialpy.core.VTKReaderError"], [1, "spatialpy.core.spatialpyerror.VTKReaderError"]], "vtkreaderioerror": [[1, "spatialpy.core.VTKReaderIOError"], [1, "spatialpy.core.spatialpyerror.VTKReaderIOError"]], "visualization (class in spatialpy.core)": [[1, "spatialpy.core.Visualization"]], "visualization (class in spatialpy.core.visualization)": [[1, "spatialpy.core.visualization.Visualization"]], "visualizationerror": [[1, "spatialpy.core.VisualizationError"], [1, "spatialpy.core.spatialpyerror.VisualizationError"]], "xmlmeshlattice (class in spatialpy.core)": [[1, "spatialpy.core.XMLMeshLattice"]], "xmlmeshlattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.XMLMeshLattice"]], "add() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add"]], "add() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add"]], "add_boundary_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_boundary_condition"]], "add_boundary_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_boundary_condition"]], "add_data_function() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_data_function"]], "add_data_function() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_data_function"]], "add_domain() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_domain"]], "add_domain() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_domain"]], "add_fill_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_fill_action"]], "add_fill_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_fill_action"]], "add_initial_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_initial_condition"]], "add_initial_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_initial_condition"]], "add_parameter() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_parameter"]], "add_parameter() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_parameter"]], "add_point() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_point"]], "add_point() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_point"]], "add_product() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.add_product"]], "add_product() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.add_product"]], "add_reactant() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.add_reactant"]], "add_reactant() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.add_reactant"]], "add_reaction() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_reaction"]], "add_reaction() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_reaction"]], "add_remove_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_remove_action"]], "add_remove_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_remove_action"]], "add_set_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_set_action"]], "add_set_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_set_action"]], "add_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_species"]], "add_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_species"]], "annotate() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.annotate"]], "annotate() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.annotate"]], "append() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.append"]], "append() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.append"]], "apply() (spatialpy.core.cartesianlattice method)": [[1, "spatialpy.core.CartesianLattice.apply"]], "apply() (spatialpy.core.cylindricallattice method)": [[1, "spatialpy.core.CylindricalLattice.apply"]], "apply() (spatialpy.core.initialcondition method)": [[1, "spatialpy.core.InitialCondition.apply"]], "apply() (spatialpy.core.meshiolattice method)": [[1, "spatialpy.core.MeshIOLattice.apply"]], "apply() (spatialpy.core.placeinitialcondition method)": [[1, "spatialpy.core.PlaceInitialCondition.apply"]], "apply() (spatialpy.core.scatterinitialcondition method)": [[1, "spatialpy.core.ScatterInitialCondition.apply"]], "apply() (spatialpy.core.sphericallattice method)": [[1, "spatialpy.core.SphericalLattice.apply"]], "apply() (spatialpy.core.stochsslattice method)": [[1, "spatialpy.core.StochSSLattice.apply"]], "apply() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.apply"]], "apply() (spatialpy.core.uniforminitialcondition method)": [[1, "spatialpy.core.UniformInitialCondition.apply"]], "apply() (spatialpy.core.xmlmeshlattice method)": [[1, "spatialpy.core.XMLMeshLattice.apply"]], "apply() (spatialpy.core.initialcondition.initialcondition method)": [[1, "spatialpy.core.initialcondition.InitialCondition.apply"]], "apply() (spatialpy.core.initialcondition.placeinitialcondition method)": [[1, "spatialpy.core.initialcondition.PlaceInitialCondition.apply"]], "apply() (spatialpy.core.initialcondition.scatterinitialcondition method)": [[1, "spatialpy.core.initialcondition.ScatterInitialCondition.apply"]], "apply() (spatialpy.core.initialcondition.uniforminitialcondition method)": [[1, "spatialpy.core.initialcondition.UniformInitialCondition.apply"]], "apply() (spatialpy.core.lattice.cartesianlattice method)": [[1, "spatialpy.core.lattice.CartesianLattice.apply"]], "apply() (spatialpy.core.lattice.cylindricallattice method)": [[1, "spatialpy.core.lattice.CylindricalLattice.apply"]], "apply() (spatialpy.core.lattice.lattice method)": [[1, "spatialpy.core.lattice.Lattice.apply"]], "apply() (spatialpy.core.lattice.meshiolattice method)": [[1, "spatialpy.core.lattice.MeshIOLattice.apply"]], "apply() (spatialpy.core.lattice.sphericallattice method)": [[1, "spatialpy.core.lattice.SphericalLattice.apply"]], "apply() (spatialpy.core.lattice.stochsslattice method)": [[1, "spatialpy.core.lattice.StochSSLattice.apply"]], "apply() (spatialpy.core.lattice.xmlmeshlattice method)": [[1, "spatialpy.core.lattice.XMLMeshLattice.apply"]], "apply() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.apply"]], "apply_actions() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_actions"]], "apply_actions() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_actions"]], "apply_fill_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_fill_action"]], "apply_fill_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_fill_action"]], "apply_remove_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_remove_action"]], "apply_remove_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_remove_action"]], "apply_set_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_set_action"]], "apply_set_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_set_action"]], "arange() (spatialpy.core.timespan class method)": [[1, "spatialpy.core.TimeSpan.arange"]], "arange() (spatialpy.core.timespan.timespan class method)": [[1, "spatialpy.core.timespan.TimeSpan.arange"]], "calculate_vol() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.calculate_vol"]], "calculate_vol() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.calculate_vol"]], "cleanup_build_files() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_build_files"]], "cleanup_build_files() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_build_files"]], "cleanup_core_files() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_core_files"]], "cleanup_core_files() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_core_files"]], "cleanup_result_files() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_result_files"]], "cleanup_result_files() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_result_files"]], "cleanup_tempfiles() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_tempfiles"]], "cleanup_tempfiles() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_tempfiles"]], "closest_vertex() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.closest_vertex"]], "closest_vertex() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.closest_vertex"]], "compile_prep() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.compile_prep"]], "compile_prep() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.compile_prep"]], "compile_prep() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.compile_prep"]], "compile_prep() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.compile_prep"]], "coordinates() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.coordinates"]], "coordinates() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.coordinates"]], "create_2d_domain() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.create_2D_domain"]], "create_2d_domain() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.create_2D_domain"]], "create_3d_domain() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.create_3D_domain"]], "create_3d_domain() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.create_3D_domain"]], "delete_all_boundary_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_boundary_conditions"]], "delete_all_boundary_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_boundary_conditions"]], "delete_all_data_functions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_data_functions"]], "delete_all_data_functions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_data_functions"]], "delete_all_initial_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_initial_conditions"]], "delete_all_initial_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_initial_conditions"]], "delete_all_parameters() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_parameters"]], "delete_all_parameters() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_parameters"]], "delete_all_reactions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_reactions"]], "delete_all_reactions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_reactions"]], "delete_all_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_species"]], "delete_all_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_species"]], "delete_boundary_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_boundary_condition"]], "delete_boundary_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_boundary_condition"]], "delete_data_function() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_data_function"]], "delete_data_function() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_data_function"]], "delete_initial_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_initial_condition"]], "delete_initial_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_initial_condition"]], "delete_parameter() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_parameter"]], "delete_parameter() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_parameter"]], "delete_reaction() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_reaction"]], "delete_reaction() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_reaction"]], "delete_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_species"]], "delete_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_species"]], "distance_between_2_vertices() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.distance_between_2_vertices"]], "distance_between_2_vertices() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.distance_between_2_vertices"]], "export_stochss() (in module spatialpy.core)": [[1, "spatialpy.core.export_StochSS"]], "export_stochss() (in module spatialpy.core.model)": [[1, "spatialpy.core.model.export_StochSS"]], "export_to_csv() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.export_to_csv"]], "export_to_csv() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.export_to_csv"]], "expression() (spatialpy.core.boundarycondition method)": [[1, "spatialpy.core.BoundaryCondition.expression"]], "expression() (spatialpy.core.boundarycondition.boundarycondition method)": [[1, "spatialpy.core.boundarycondition.BoundaryCondition.expression"]], "fill_with_particles() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.fill_with_particles"]], "fill_with_particles() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.fill_with_particles"]], "find_boundary_points() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.find_boundary_points"]], "find_boundary_points() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.find_boundary_points"]], "find_h() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.find_h"]], "find_h() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.find_h"]], "from_json() (spatialpy.core.reaction class method)": [[1, "spatialpy.core.Reaction.from_json"]], "from_json() (spatialpy.core.reaction.reaction class method)": [[1, "spatialpy.core.reaction.Reaction.from_json"]], "get_all_boundary_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_boundary_conditions"]], "get_all_boundary_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_boundary_conditions"]], "get_all_data_functions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_data_functions"]], "get_all_data_functions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_data_functions"]], "get_all_initial_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_initial_conditions"]], "get_all_initial_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_initial_conditions"]], "get_all_parameters() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_parameters"]], "get_all_parameters() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_parameters"]], "get_all_reactions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_reactions"]], "get_all_reactions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_reactions"]], "get_all_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_species"]], "get_all_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_species"]], "get_array_name() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_array_name"]], "get_array_name() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_array_name"]], "get_arrays() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_arrays"]], "get_arrays() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_arrays"]], "get_bounding_box() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_bounding_box"]], "get_bounding_box() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_bounding_box"]], "get_data_function() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_data_function"]], "get_data_function() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_data_function"]], "get_domain_size() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_domain_size"]], "get_domain_size() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_domain_size"]], "get_element() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_element"]], "get_element() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_element"]], "get_num_points() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_num_points"]], "get_num_points() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_num_points"]], "get_num_reactions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_num_reactions"]], "get_num_reactions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_num_reactions"]], "get_num_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_num_species"]], "get_num_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_num_species"]], "get_num_voxels() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_num_voxels"]], "get_num_voxels() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_num_voxels"]], "get_parameter() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_parameter"]], "get_parameter() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_parameter"]], "get_points() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_points"]], "get_points() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_points"]], "get_property() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.get_property"]], "get_property() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.get_property"]], "get_reaction() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_reaction"]], "get_reaction() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_reaction"]], "get_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_species"]], "get_species() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.get_species"]], "get_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_species"]], "get_species() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.get_species"]], "get_timespan() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.get_timespan"]], "get_timespan() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.get_timespan"]], "get_type_def() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_type_def"]], "get_type_def() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_type_def"]], "get_vol() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_vol"]], "get_vol() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_vol"]], "import_meshio_object() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.import_meshio_object"]], "import_meshio_object() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.import_meshio_object"]], "initialize() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.initialize"]], "initialize() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.initialize"]], "inside() (spatialpy.core.combinatorygeometry method)": [[1, "spatialpy.core.CombinatoryGeometry.inside"]], "inside() (spatialpy.core.geometry method)": [[1, "spatialpy.core.Geometry.inside"]], "inside() (spatialpy.core.geometryall method)": [[1, "spatialpy.core.GeometryAll.inside"]], "inside() (spatialpy.core.geometryexterior method)": [[1, "spatialpy.core.GeometryExterior.inside"]], "inside() (spatialpy.core.geometryinterior method)": [[1, "spatialpy.core.GeometryInterior.inside"]], "inside() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.inside"]], "inside() (spatialpy.core.geometry.combinatorygeometry method)": [[1, "spatialpy.core.geometry.CombinatoryGeometry.inside"]], "inside() (spatialpy.core.geometry.geometry method)": [[1, "spatialpy.core.geometry.Geometry.inside"]], "inside() (spatialpy.core.geometry.geometryall method)": [[1, "spatialpy.core.geometry.GeometryAll.inside"]], "inside() (spatialpy.core.geometry.geometryexterior method)": [[1, "spatialpy.core.geometry.GeometryExterior.inside"]], "inside() (spatialpy.core.geometry.geometryinterior method)": [[1, "spatialpy.core.geometry.GeometryInterior.inside"]], "inside() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.inside"]], "linspace() (spatialpy.core.timespan class method)": [[1, "spatialpy.core.TimeSpan.linspace"]], "linspace() (spatialpy.core.timespan.timespan class method)": [[1, "spatialpy.core.timespan.TimeSpan.linspace"]], "map() (spatialpy.core.datafunction method)": [[1, "spatialpy.core.DataFunction.map"]], "map() (spatialpy.core.datafunction.datafunction method)": [[1, "spatialpy.core.datafunction.DataFunction.map"]], "plot_property() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.plot_property"]], "plot_property() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.plot_property"]], "plot_scatter() (spatialpy.core.visualization method)": [[1, "spatialpy.core.Visualization.plot_scatter"]], "plot_scatter() (spatialpy.core.visualization.visualization method)": [[1, "spatialpy.core.visualization.Visualization.plot_scatter"]], "plot_species() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.plot_species"]], "plot_species() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.plot_species"]], "plot_types() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.plot_types"]], "plot_types() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.plot_types"]], "preview_actions() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.preview_actions"]], "preview_actions() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.preview_actions"]], "read_file() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.read_file"]], "read_file() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.read_file"]], "read_msh_file() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.read_msh_file"]], "read_msh_file() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.read_msh_file"]], "read_step() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.read_step"]], "read_step() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.read_step"]], "read_stochss_domain() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.read_stochss_domain"]], "read_stochss_domain() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.read_stochss_domain"]], "read_stochss_subdomain_file() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.read_stochss_subdomain_file"]], "read_stochss_subdomain_file() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.read_stochss_subdomain_file"]], "read_xml_mesh() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.read_xml_mesh"]], "read_xml_mesh() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.read_xml_mesh"]], "reserved_names (spatialpy.core.model attribute)": [[1, "spatialpy.core.Model.reserved_names"]], "reserved_names (spatialpy.core.model.model attribute)": [[1, "spatialpy.core.model.Model.reserved_names"]], "reverse_transform() (spatialpy.core.reflectiontransformation method)": [[1, "spatialpy.core.ReflectionTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.rotationtransformation method)": [[1, "spatialpy.core.RotationTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.scalingtransformation method)": [[1, "spatialpy.core.ScalingTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.reverse_transform"]], "reverse_transform() (spatialpy.core.translationtransformation method)": [[1, "spatialpy.core.TranslationTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.reflectiontransformation method)": [[1, "spatialpy.core.transformation.ReflectionTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.rotationtransformation method)": [[1, "spatialpy.core.transformation.RotationTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.scalingtransformation method)": [[1, "spatialpy.core.transformation.ScalingTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.translationtransformation method)": [[1, "spatialpy.core.transformation.TranslationTransformation.reverse_transform"]], "run() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.run"]], "run() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.run"]], "sanitized_data_function_names() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.sanitized_data_function_names"]], "sanitized_data_function_names() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.sanitized_data_function_names"]], "sanitized_parameter_names() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.sanitized_parameter_names"]], "sanitized_parameter_names() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.sanitized_parameter_names"]], "sanitized_propensity_function() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.sanitized_propensity_function"]], "sanitized_propensity_function() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.sanitized_propensity_function"]], "sanitized_species_names() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.sanitized_species_names"]], "sanitized_species_names() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.sanitized_species_names"]], "set_annotation() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.set_annotation"]], "set_annotation() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.set_annotation"]], "set_diffusion_coefficient() (spatialpy.core.species method)": [[1, "spatialpy.core.Species.set_diffusion_coefficient"]], "set_diffusion_coefficient() (spatialpy.core.species.species method)": [[1, "spatialpy.core.species.Species.set_diffusion_coefficient"]], "set_filename() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.set_filename"]], "set_filename() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.set_filename"]], "set_propensities() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.set_propensities"]], "set_propensities() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.set_propensities"]], "set_properties() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.set_properties"]], "set_properties() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.set_properties"]], "set_rate() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.set_rate"]], "set_rate() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.set_rate"]], "set_timesteps() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.set_timesteps"]], "set_timesteps() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.set_timesteps"]], "spatialpy.core": [[1, "module-spatialpy.core"]], "spatialpy.core.boundarycondition": [[1, "module-spatialpy.core.boundarycondition"]], "spatialpy.core.cleanup": [[1, "module-spatialpy.core.cleanup"]], "spatialpy.core.datafunction": [[1, "module-spatialpy.core.datafunction"]], "spatialpy.core.domain": [[1, "module-spatialpy.core.domain"]], "spatialpy.core.geometry": [[1, "module-spatialpy.core.geometry"]], "spatialpy.core.initialcondition": [[1, "module-spatialpy.core.initialcondition"]], "spatialpy.core.lattice": [[1, "module-spatialpy.core.lattice"]], "spatialpy.core.model": [[1, "module-spatialpy.core.model"]], "spatialpy.core.parameter": [[1, "module-spatialpy.core.parameter"]], "spatialpy.core.reaction": [[1, "module-spatialpy.core.reaction"]], "spatialpy.core.result": [[1, "module-spatialpy.core.result"]], "spatialpy.core.spatialpyerror": [[1, "module-spatialpy.core.spatialpyerror"]], "spatialpy.core.species": [[1, "module-spatialpy.core.species"]], "spatialpy.core.timespan": [[1, "module-spatialpy.core.timespan"]], "spatialpy.core.transformation": [[1, "module-spatialpy.core.transformation"]], "spatialpy.core.visualization": [[1, "module-spatialpy.core.visualization"]], "spatialpy.core.vtkreader": [[1, "module-spatialpy.core.vtkreader"]], "special_characters (spatialpy.core.model attribute)": [[1, "spatialpy.core.Model.special_characters"]], "special_characters (spatialpy.core.model.model attribute)": [[1, "spatialpy.core.model.Model.special_characters"]], "timespan() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.timespan"]], "timespan() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.timespan"]], "to_dict() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.to_dict"]], "to_dict() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.to_dict"]], "transform() (spatialpy.core.reflectiontransformation method)": [[1, "spatialpy.core.ReflectionTransformation.transform"]], "transform() (spatialpy.core.rotationtransformation method)": [[1, "spatialpy.core.RotationTransformation.transform"]], "transform() (spatialpy.core.scalingtransformation method)": [[1, "spatialpy.core.ScalingTransformation.transform"]], "transform() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.transform"]], "transform() (spatialpy.core.translationtransformation method)": [[1, "spatialpy.core.TranslationTransformation.transform"]], "transform() (spatialpy.core.transformation.reflectiontransformation method)": [[1, "spatialpy.core.transformation.ReflectionTransformation.transform"]], "transform() (spatialpy.core.transformation.rotationtransformation method)": [[1, "spatialpy.core.transformation.RotationTransformation.transform"]], "transform() (spatialpy.core.transformation.scalingtransformation method)": [[1, "spatialpy.core.transformation.ScalingTransformation.transform"]], "transform() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.transform"]], "transform() (spatialpy.core.transformation.translationtransformation method)": [[1, "spatialpy.core.transformation.TranslationTransformation.transform"]], "update_namespace() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.update_namespace"]], "update_namespace() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.update_namespace"]], "validate() (spatialpy.core.cartesianlattice method)": [[1, "spatialpy.core.CartesianLattice.validate"]], "validate() (spatialpy.core.combinatorygeometry method)": [[1, "spatialpy.core.CombinatoryGeometry.validate"]], "validate() (spatialpy.core.cylindricallattice method)": [[1, "spatialpy.core.CylindricalLattice.validate"]], "validate() (spatialpy.core.meshiolattice method)": [[1, "spatialpy.core.MeshIOLattice.validate"]], "validate() (spatialpy.core.parameter method)": [[1, "spatialpy.core.Parameter.validate"]], "validate() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.validate"]], "validate() (spatialpy.core.rotationtransformation method)": [[1, "spatialpy.core.RotationTransformation.validate"]], "validate() (spatialpy.core.scalingtransformation method)": [[1, "spatialpy.core.ScalingTransformation.validate"]], "validate() (spatialpy.core.species method)": [[1, "spatialpy.core.Species.validate"]], "validate() (spatialpy.core.sphericallattice method)": [[1, "spatialpy.core.SphericalLattice.validate"]], "validate() (spatialpy.core.stochsslattice method)": [[1, "spatialpy.core.StochSSLattice.validate"]], "validate() (spatialpy.core.timespan method)": [[1, "spatialpy.core.TimeSpan.validate"]], "validate() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.validate"]], "validate() (spatialpy.core.translationtransformation method)": [[1, "spatialpy.core.TranslationTransformation.validate"]], "validate() (spatialpy.core.xmlmeshlattice method)": [[1, "spatialpy.core.XMLMeshLattice.validate"]], "validate() (spatialpy.core.geometry.combinatorygeometry method)": [[1, "spatialpy.core.geometry.CombinatoryGeometry.validate"]], "validate() (spatialpy.core.lattice.cartesianlattice method)": [[1, "spatialpy.core.lattice.CartesianLattice.validate"]], "validate() (spatialpy.core.lattice.cylindricallattice method)": [[1, "spatialpy.core.lattice.CylindricalLattice.validate"]], "validate() (spatialpy.core.lattice.lattice method)": [[1, "spatialpy.core.lattice.Lattice.validate"]], "validate() (spatialpy.core.lattice.meshiolattice method)": [[1, "spatialpy.core.lattice.MeshIOLattice.validate"]], "validate() (spatialpy.core.lattice.sphericallattice method)": [[1, "spatialpy.core.lattice.SphericalLattice.validate"]], "validate() (spatialpy.core.lattice.stochsslattice method)": [[1, "spatialpy.core.lattice.StochSSLattice.validate"]], "validate() (spatialpy.core.lattice.xmlmeshlattice method)": [[1, "spatialpy.core.lattice.XMLMeshLattice.validate"]], "validate() (spatialpy.core.parameter.parameter method)": [[1, "spatialpy.core.parameter.Parameter.validate"]], "validate() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.validate"]], "validate() (spatialpy.core.species.species method)": [[1, "spatialpy.core.species.Species.validate"]], "validate() (spatialpy.core.timespan.timespan method)": [[1, "spatialpy.core.timespan.TimeSpan.validate"]], "validate() (spatialpy.core.transformation.rotationtransformation method)": [[1, "spatialpy.core.transformation.RotationTransformation.validate"]], "validate() (spatialpy.core.transformation.scalingtransformation method)": [[1, "spatialpy.core.transformation.ScalingTransformation.validate"]], "validate() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.validate"]], "validate() (spatialpy.core.transformation.translationtransformation method)": [[1, "spatialpy.core.transformation.TranslationTransformation.validate"]], "validate_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.validate_action"]], "validate_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.validate_action"]], "buildexpression (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.BuildExpression"]], "buildexpression.validationvisitor (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor"]], "cppconverter (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.CppConverter"]], "cppconverter.cppexpressiontransformer (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.CppConverter.CppExpressionTransformer"]], "expressionconverter (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter"]], "expressionresults (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.ExpressionResults"]], "pythonconverter (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.PythonConverter"]], "solver (class in spatialpy.solvers.solver)": [[2, "spatialpy.solvers.solver.Solver"]], "compile() (spatialpy.solvers.solver.solver method)": [[2, "spatialpy.solvers.solver.Solver.compile"]], "convert_str() (spatialpy.solvers.build_expression.expressionconverter class method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.convert_str"]], "get_str() (spatialpy.solvers.build_expression.cppconverter method)": [[2, "spatialpy.solvers.build_expression.CppConverter.get_str"]], "get_str() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.get_str"]], "getexpr_cpp() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.getexpr_cpp"]], "getexpr_python() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.getexpr_python"]], "map_operator() (spatialpy.solvers.build_expression.buildexpression class method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.map_operator"]], "operator_map (spatialpy.solvers.build_expression.buildexpression attribute)": [[2, "spatialpy.solvers.build_expression.BuildExpression.operator_map"]], "parse_comparison() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.parse_comparison"]], "parse_logical() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.parse_logical"]], "parse_operator() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.parse_operator"]], "run() (spatialpy.solvers.solver.solver method)": [[2, "spatialpy.solvers.solver.Solver.run"]], "spatialpy.solvers": [[2, "module-spatialpy.solvers"]], "spatialpy.solvers.build_expression": [[2, "module-spatialpy.solvers.build_expression"]], "spatialpy.solvers.solver": [[2, "module-spatialpy.solvers.solver"]], "validate() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.validate"]], "visit_add() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Add"]], "visit_and() (spatialpy.solvers.build_expression.cppconverter method)": [[2, "spatialpy.solvers.build_expression.CppConverter.visit_And"]], "visit_and() (spatialpy.solvers.build_expression.pythonconverter method)": [[2, "spatialpy.solvers.build_expression.PythonConverter.visit_And"]], "visit_assign() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Assign"]], "visit_binop() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_BinOp"]], "visit_binop() (spatialpy.solvers.build_expression.cppconverter.cppexpressiontransformer method)": [[2, "spatialpy.solvers.build_expression.CppConverter.CppExpressionTransformer.visit_BinOp"]], "visit_binop() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_BinOp"]], "visit_boolop() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_BoolOp"]], "visit_boolop() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_BoolOp"]], "visit_bytes() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Bytes"]], "visit_call() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Call"]], "visit_call() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Call"]], "visit_compare() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Compare"]], "visit_compare() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Compare"]], "visit_constant() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Constant"]], "visit_div() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Div"]], "visit_ellipsis() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Ellipsis"]], "visit_eq() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Eq"]], "visit_gt() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Gt"]], "visit_gte() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_GtE"]], "visit_lt() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Lt"]], "visit_lte() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_LtE"]], "visit_mult() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Mult"]], "visit_name() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Name"]], "visit_name() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Name"]], "visit_nameconstant() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_NameConstant"]], "visit_noteq() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_NotEq"]], "visit_num() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Num"]], "visit_or() (spatialpy.solvers.build_expression.cppconverter method)": [[2, "spatialpy.solvers.build_expression.CppConverter.visit_Or"]], "visit_or() (spatialpy.solvers.build_expression.pythonconverter method)": [[2, "spatialpy.solvers.build_expression.PythonConverter.visit_Or"]], "visit_pow() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Pow"]], "visit_str() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Str"]], "visit_sub() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Sub"]], "visit_usub() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_USub"]], "visit_unaryop() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_UnaryOp"]], "visit_unaryop() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_UnaryOp"]], "with_blacklist() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.with_blacklist"]], "with_namespace() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.with_namespace"]], "export() (in module spatialpy.stochss.stochss_export)": [[3, "spatialpy.stochss.stochss_export.export"]], "spatialpy.stochss": [[3, "module-spatialpy.stochss"]], "spatialpy.stochss.stochss_export": [[3, "module-spatialpy.stochss.stochss_export"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["classes/spatialpy", "classes/spatialpy.core", "classes/spatialpy.solvers", "classes/spatialpy.stochss", "index"], "filenames": ["classes/spatialpy.rst", "classes/spatialpy.core.rst", "classes/spatialpy.solvers.rst", "classes/spatialpy.stochss.rst", "index.rst"], "titles": ["spatialpy package", "spatialpy.core package", "spatialpy.solvers package", "spatialpy.stochss package", "Documentation for SpatialPy 1.2.2"], "terms": {"core": [0, 2, 3, 4], "submodul": 0, "boundarycondit": 0, "express": [0, 1, 2], "cleanup": 0, "cleanup_build_fil": [0, 1], "cleanup_core_fil": [0, 1], "cleanup_result_fil": [0, 1], "cleanup_tempfil": [0, 1], "datafunct": 0, "map": [0, 1, 2], "domain": [0, 4], "add_fill_act": [0, 1], "add_point": [0, 1], "add_remove_act": [0, 1], "add_set_act": [0, 1], "apply_act": [0, 1], "apply_fill_act": [0, 1], "apply_remove_act": [0, 1], "apply_set_act": [0, 1], "calculate_vol": [0, 1], "closest_vertex": [0, 1], "compile_prep": [0, 1], "coordin": [0, 1], "create_2d_domain": [0, 1], "create_3d_domain": [0, 1], "distance_between_2_vertic": [0, 1], "fill_with_particl": [0, 1], "find_boundary_point": [0, 1], "find_h": [0, 1], "get_bounding_box": [0, 1], "get_domain_s": [0, 1], "get_num_voxel": [0, 1], "get_type_def": [0, 1], "get_vol": [0, 1], "import_meshio_object": [0, 1], "plot_typ": [0, 1], "preview_act": [0, 1], "read_msh_fil": [0, 1], "read_stochss_domain": [0, 1], "read_stochss_subdomain_fil": [0, 1], "read_xml_mesh": [0, 1], "set_properti": [0, 1], "validate_act": [0, 1], "geometri": 0, "combinatorygeometri": [0, 1], "insid": [0, 1], "valid": [0, 1, 2], "geometryal": [0, 1], "geometryexterior": [0, 1], "geometryinterior": [0, 1], "initialcondit": 0, "appli": [0, 1], "placeinitialcondit": [0, 1], "scatterinitialcondit": [0, 1], "uniforminitialcondit": [0, 1], "lattic": 0, "cartesianlattic": [0, 1], "cylindricallattic": [0, 1], "meshiolattic": [0, 1], "sphericallattic": [0, 1], "stochsslattic": [0, 1], "xmlmeshlattic": [0, 1], "model": [0, 2, 3, 4], "add": [0, 1, 2], "add_boundary_condit": [0, 1], "add_data_funct": [0, 1], "add_domain": [0, 1], "add_initial_condit": [0, 1], "add_paramet": [0, 1], "add_react": [0, 1], "add_speci": [0, 1], "delete_all_boundary_condit": [0, 1], "delete_all_data_funct": [0, 1], "delete_all_initial_condit": [0, 1], "delete_all_paramet": [0, 1], "delete_all_react": [0, 1], "delete_all_speci": [0, 1], "delete_boundary_condit": [0, 1], "delete_data_funct": [0, 1], "delete_initial_condit": [0, 1], "delete_paramet": [0, 1], "delete_react": [0, 1], "delete_speci": [0, 1], "get_all_boundary_condit": [0, 1], "get_all_data_funct": [0, 1], "get_all_initial_condit": [0, 1], "get_all_paramet": [0, 1], "get_all_react": [0, 1], "get_all_speci": [0, 1], "get_data_funct": [0, 1], "get_el": [0, 1], "get_num_react": [0, 1], "get_num_speci": [0, 1], "get_paramet": [0, 1], "get_react": [0, 1], "get_speci": [0, 1], "reserved_nam": [0, 1], "run": [0, 1, 2], "sanitized_data_function_nam": [0, 1], "sanitized_parameter_nam": [0, 1], "sanitized_species_nam": [0, 1], "set_timestep": [0, 1], "special_charact": [0, 1], "timespan": 0, "update_namespac": [0, 1], "export_stochss": [0, 1], "paramet": [0, 2, 3], "reaction": [0, 4], "add_product": [0, 1], "annot": [0, 1], "from_json": [0, 1], "initi": [0, 1], "sanitized_propensity_funct": [0, 1], "set_annot": [0, 1], "set_propens": [0, 1], "set_rat": [0, 1], "to_dict": [0, 1], "result": [0, 2], "export_to_csv": [0, 1], "get_properti": [0, 1], "get_timespan": [0, 1], "plot_properti": [0, 1], "plot_speci": [0, 1], "read_step": [0, 1], "spatialpyerror": 0, "boundaryconditionerror": [0, 1], "datafunctionerror": [0, 1], "domainerror": [0, 1], "geometryerror": [0, 1], "initialconditionerror": [0, 1], "latticeerror": [0, 1], "modelerror": [0, 1], "parametererror": [0, 1], "reactionerror": [0, 1], "resulterror": [0, 1], "simulationerror": [0, 1, 2], "simulationtimeout": [0, 1], "specieserror": [0, 1], "timespanerror": [0, 1], "transformationerror": [0, 1], "vtkreadererror": [0, 1], "vtkreaderioerror": [0, 1], "visualizationerror": [0, 1], "speci": 0, "set_diffusion_coeffici": [0, 1], "arang": [0, 1], "linspac": [0, 1], "transform": 0, "reflectiontransform": [0, 1], "reverse_transform": [0, 1], "rotationtransform": [0, 1], "scalingtransform": [0, 1], "translationtransform": [0, 1], "visual": 0, "mpl_height": [0, 1], "mpl_size": [0, 1], "mpl_width": [0, 1], "plot_scatt": [0, 1], "vtkreader": 0, "get_array_nam": [0, 1], "get_arrai": [0, 1], "get_num_point": [0, 1], "get_point": [0, 1], "read_fil": [0, 1], "set_filenam": [0, 1], "solver": [0, 1, 4], "build_express": 0, "buildexpress": [0, 2], "validationvisitor": [0, 2], "getexpr_cpp": [0, 2], "getexpr_python": [0, 2], "map_oper": [0, 2], "operator_map": [0, 2], "with_blacklist": [0, 2], "with_namespac": [0, 2], "cppconvert": [0, 2], "cppexpressiontransform": [0, 2], "get_str": [0, 2], "visit_and": [0, 2], "visit_or": [0, 2], "expressionconvert": [0, 2], "convert_str": [0, 2], "parse_comparison": [0, 2], "parse_log": [0, 2], "parse_oper": [0, 2], "visit_add": [0, 2], "visit_binop": [0, 2], "visit_boolop": [0, 2], "visit_byt": [0, 2], "visit_cal": [0, 2], "visit_compar": [0, 2], "visit_const": [0, 2], "visit_div": [0, 2], "visit_ellipsi": [0, 2], "visit_eq": [0, 2], "visit_gt": [0, 2], "visit_lt": [0, 2], "visit_mult": [0, 2], "visit_nam": [0, 2], "visit_nameconst": [0, 2], "visit_noteq": [0, 2], "visit_num": [0, 2], "visit_pow": [0, 2], "visit_str": [0, 2], "visit_sub": [0, 2], "visit_usub": [0, 2], "visit_unaryop": [0, 2], "expressionresult": [0, 2], "pythonconvert": [0, 2], "compil": [0, 1, 2], "stochss": [0, 1, 4], "stochss_export": 0, "export": [0, 1, 3], "class": [1, 2], "xmin": 1, "none": [1, 2, 3], "xmax": 1, "ymin": 1, "ymax": 1, "zmin": 1, "zmax": 1, "type_id": 1, "determinist": [1, 4], "true": [1, 2, 3], "target": [1, 2], "valu": [1, 2], "sourc": [1, 2, 3, 4], "base": [1, 2, 4], "object": [1, 2], "set": [1, 2], "spatial": [1, 2, 4], "region": 1, "where": 1, "properti": [1, 2], "particl": [1, 4], "ar": [1, 2], "held": 1, "constant": [1, 2], "updat": 1, "each": 1, "simul": [1, 2, 4], "step": 1, "condit": [1, 2], "one": [1, 2], "more": [1, 2, 4], "follow": [1, 2], "must": 1, "float": 1, "min": 1, "max": 1, "x": 1, "dimens": 1, "y": 1, "z": 1, "type": [1, 2, 3], "subdomain": 1, "partcil": 1, "str": [1, 2, 3], "nu": 1, "rho": 1, "v": 1, "name": [1, 2], "chemic": 1, "also": [1, 2, 4], "fals": [1, 2, 3], "flag": [1, 2], "axi": 1, "lower": 1, "bound": 1, "upper": 1, "int": [1, 2], "id": 1, "bool": [1, 2, 3], "i": [1, 2, 3, 4], "boundari": 1, "yet": 1, "implemenet": 1, "stochast": [1, 4], "can": [1, 2, 4], "If": [1, 2, 4], "determinst": 1, "3": [1, 4], "take": 1, "defin": [1, 2], "creat": [1, 2], "evalu": 1, "string": [1, 2], "return": [1, 2, 3], "A": [1, 2, 4], "represent": [1, 2], "build_dir": 1, "all": [1, 2], "spatialpy_build": 1, "directori": 1, "path": [1, 3], "build": [1, 2, 4], "remov": 1, "option": 1, "tempfil": 1, "result_dir": 1, "spatialpy_result": 1, "abstract": [1, 2], "us": [1, 2, 4], "constuct": 1, "data": [1, 2], "function": [1, 2], "rais": [1, 2], "provid": [1, 2, 4], "point": 1, "thi": [1, 2, 4], "method": [1, 2], "overridden": 1, "subclass": [1, 2], "note": [1, 2], "The": [1, 2, 4], "locat": 1, "evaul": 1, "t": [1, 2], "0": [1, 2], "re": 1, "fluid": [1, 4], "move": 1, "over": 1, "time": [1, 2], "posit": 1, "numpoint": 1, "xlim": 1, "ylim": 1, "zlim": 1, "rho0": 1, "1": [1, 2], "c0": 1, "10": 1, "p0": 1, "graviti": [1, 4], "action": 1, "attribut": 1, "space": 1, "total": 1, "number": [1, 2], "2": 1, "rang": 1, "along": 1, "background": 1, "densiti": 1, "system": [1, 4], "speed": 1, "sound": 1, "pressur": 1, "acceler": 1, "cartesian": 1, "spheric": 1, "cylindr": 1, "enabl": 1, "prop": 1, "an": [1, 2, 4], "when": [1, 2], "fill": [1, 4], "default": 1, "dict": [1, 2, 3], "argument": 1, "ignor": 1, "indic": [1, 2], "els": [1, 3], "addit": [1, 2], "pass": [1, 2], "ad": [1, 2], "wasn": 1, "could": [1, 2], "construct": 1, "vol": 1, "mass": 1, "unassign": 1, "fix": 1, "c": [1, 2], "singl": [1, 2], "vertic": 1, "volum": 1, "cradded": 1, "viscos": 1, "artifici": 1, "contain": [1, 2], "invalid": [1, 2], "charact": 1, "from": [1, 2], "start": [1, 2, 4], "end": 1, "preserve_act": 1, "order": 1, "index": [1, 4], "inclus": 1, "exclus": 1, "after": 1, "its": 1, "support": [1, 4], "within": 1, "have": 1, "exampl": 1, "lattice_obj": 1, "geometry_obj": 1, "miss": 1, "calcul": 1, "find": [1, 4], "nearest": 1, "vertex": 1, "given": [1, 2], "gener": [1, 4], "list": [1, 2], "check": [1, 2], "preper": 1, "file": [1, 3], "get": [1, 2], "numpi": 1, "arrai": 1, "classmethod": [1, 2], "numx": 1, "numi": 1, "kwarg": 1, "2d": 1, "highest": 1, "lowest": 1, "keyword": 1, "uniform": 1, "numz": 1, "3d": [1, 4], "distanc": 1, "between": [1, 2], "measur": 1, "geometry_ivar": 1, "deltax": 1, "deltai": 1, "deltaz": 1, "geometr": 1, "shape": 1, "instanc": [1, 2], "minimum": 1, "box": 1, "maximum": [1, 2], "were": [1, 2], "exist": 1, "np": 1, "ndarrai": 1, "dtype": 1, "h": 1, "off": 1, "which": [1, 2], "ha": [1, 4], "greatest": 1, "neighbor": 1, "entir": 1, "limit": 1, "tupl": 1, "estim": 1, "size": 1, "averag": 1, "diamet": 1, "circumradiu": 1, "tetrahedron": 1, "part": 1, "mean": 1, "incid": 1, "cell": 1, "voxel": 1, "definit": 1, "mesh_obj": 1, "subdomain_fil": 1, "import": 1, "python": [1, 2, 4], "meshio": 1, "mesh": 1, "v1": 1, "descript": 1, "filenam": [1, 3], "indeci": 1, "width": 1, "height": 1, "colormap": 1, "titl": 1, "included_types_list": 1, "use_matplotlib": 1, "return_plotly_figur": 1, "plot": 1, "plotli": 1, "onli": [1, 2], "view": 1, "jupyt": 1, "notebook": [1, 4], "pixel": 1, "output": [1, 2], "matplotlib": 1, "inch": 1, "500": 1, "specif": 1, "plotly3": 1, "jet": 1, "blue": 1, "ylorrd": 1, "purd": 1, "bugn": 1, "ylorbr": 1, "pubugn": 1, "bupu": 1, "ylgnbu": 1, "pubu": 1, "gnbu": 1, "ylgn": 1, "green": 1, "red": 1, "grei": 1, "rdpu": 1, "orrd": 1, "purpl": 1, "orang": 1, "graph": 1, "describ": [1, 4], "includ": 1, "By": [1, 2], "displai": 1, "whether": [1, 2, 3], "figur": 1, "dictionari": [1, 2], "trace": 1, "layout": 1, "mai": 1, "edit": 1, "user": [1, 4], "proprti": 1, "preview": 1, "effect": 1, "read": 1, "gmsh": 1, "style": 1, "msh": 1, "domn": 1, "pull": 1, "smdl": 1, "txt": 1, "conain": 1, "fenic": 1, "dolfin": 1, "xml": 1, "assign": [1, 2], "identifi": [1, 2], "immobil": 1, "coverag": 1, "scope": 1, "accept": [1, 2], "doaminerror": 1, "met": 1, "": [1, 4], "formula": 1, "geo_namespac": 1, "combinatori": 1, "multipl": [1, 2], "boolean": 1, "logic": [1, 2], "geo1": 1, "geo2": 1, "geo3": 1, "namespac": [1, 2], "geometry1": 1, "geometry2": 1, "geometry3": 1, "found": [1, 2, 4], "on_boundari": 1, "coodin": 1, "edg": 1, "satisfi": 1, "geometi": 1, "ani": [1, 2, 4], "doe": 1, "tag": 1, "separ": 1, "mark": 1, "work": 1, "triangl": 1, "implement": [1, 2], "direct": 1, "modifi": 1, "u0": 1, "matrix": 1, "count": 1, "contian": 1, "place": 1, "scatter": 1, "randomli": 1, "center": 1, "two": [1, 2], "doesn": 1, "restrict": 1, "depend": 1, "radiu": 1, "length": 1, "delta": 1, "deltar": 1, "surfac": 1, "radial": 1, "skip_valid": 1, "arg": 1, "io": 1, "un": 1, "biochem": 1, "compon": 1, "befor": 1, "other": [1, 2], "combin": 1, "than": 1, "do": 1, "need": [1, 4], "particular": 1, "bound_cond": 1, "conidit": 1, "data_funct": 1, "scalar": 1, "you": [1, 4], "vari": 1, "input": 1, "your": [1, 4], "It": 1, "positon": 1, "toth": 1, "init_cond": 1, "fail": [1, 2], "make": 1, "sure": 1, "paramt": 1, "diffus": [1, 4], "util": 1, "stoichiometr": 1, "dependency_graph": 1, "timestep": 1, "exce": 1, "frequenc": 1, "ordereddict": 1, "form": [1, 4], "kei": [1, 2], "specifi": 1, "element": 1, "differ": [1, 2], "rname": [], "number_of_trajectori": [1, 2], "seed": [1, 2], "timeout": [1, 2], "number_of_thread": [1, 2], "debug_level": [1, 2], "debug": [1, 2], "profil": [1, 2], "how": [1, 2, 4], "mani": [1, 2], "trajectori": [1, 2], "should": [1, 2], "random": [1, 2], "second": [1, 2], "kill": 1, "upon": 1, "reach": 1, "thread": [1, 2], "level": [1, 2], "print": [1, 2], "out": [1, 4], "info": 1, "dure": [1, 2], "addtion": [1, 2], "perform": 1, "chosen": 1, "simplifi": 1, "format": 1, "later": [1, 2], "spatialpysolv": 1, "propens": 1, "intern": 1, "notat": 1, "output_interv": 1, "num_step": 1, "timestep_s": 1, "simlat": 1, "span": 1, "first": [1, 2], "zero": 1, "time_span": 1, "ssa": 1, "sdpd": [1, 4], "engin": 1, "non": 1, "tspan": 1, "evenli": 1, "sampl": 1, "popul": 1, "flatten": 1, "spatialpy_model": 1, "return_stochss_model": [1, 3], "convert": [1, 2, 3], "json": 1, "platform": 1, "directli": [1, 4], "understood": 1, "parent": 1, "call": [1, 2], "referenc": 1, "requir": 1, "outsid": 1, "reactant": 1, "product": 1, "propensity_funct": 1, "ode_propensity_funct": 1, "rate": 1, "restrict_to": 1, "conatain": 1, "neg": 1, "union": 1, "For": [1, 4], "zeroth": 1, "attempt": 1, "higher": 1, "error": 1, "consum": 1, "stoichiometri": 1, "would": 1, "r1": 1, "r2": 1, "event": 1, "same": 1, "custom": 1, "oper": [1, 2], "od": 1, "care": 1, "unit": 1, "about": 1, "execut": [1, 2], "NOT": 1, "both": [1, 4], "term": 1, "repres": 1, "independ": 1, "wa": 1, "impact": 1, "preserv": 1, "produc": 1, "particip": 1, "deprec": 1, "param": 1, "json_object": 1, "defer": 1, "species_map": 1, "parameter_map": 1, "chang": 1, "marat": 1, "urdm": 1, "folder_nam": 1, "write": 1, "csv": 1, "modelname_mesh": 1, "modelname_species_": 1, "column": 1, "n": 1, "vtk": 1, "written": 1, "current": [1, 2], "property_nam": 1, "timepoint": 1, "integ": 1, "1d": 1, "veloc": 1, "bvf_phi": 1, "fraction": 1, "across": 1, "concentr": 1, "retreiv": 1, "inform": [1, 2, 4], "raw": 1, "copy_numb": 1, "unabl": 1, "retriev": 1, "t_ndx": 1, "t_val": 1, "p_ndx": 1, "anim": 1, "t_ndx_list": 1, "f_durat": 1, "t_durat": 1, "300": 1, "6": 1, "4": 1, "8": 1, "indec": 1, "interv": 1, "durat": 1, "frame": [1, 4], "transit": 1, "5": 1, "show": 1, "instead": 1, "step_num": 1, "except": 1, "initailcondit": 1, "bass": 1, "messag": 1, "o": 1, "diffusion_coeffici": 1, "coeffic": 1, "coeffici": 1, "listoftyp": 1, "movement": 1, "setter": 1, "item": [1, 2], "iter": 1, "best": 1, "increment": [1, 2], "20": 1, "num_point": 1, "empti": [1, 2], "repeat": 1, "point1": 1, "normal": 1, "point2": 1, "point3": 1, "reflect": 1, "revers": 1, "around": 1, "arbitrari": 1, "plane": 1, "serv": 1, "vector": 1, "onc": 1, "wrap": 1, "prior": 1, "angl": 1, "rotat": 1, "basic": 1, "factor": 1, "scale": 1, "wrapper": 1, "translat": 1, "40": 1, "plot_arg": 1, "scatter_arg": 1, "multiple_graph": 1, "maplotlib": 1, "pyplot": 1, "subplot": 1, "dist": 1, "group": 1, "nrow": 1, "ncol": 1, "entri": 1, "plote": 1, "py": 1, "minim": 1, "legaci": 1, "reader": 1, "refer": 1, "http": [1, 4], "org": 1, "wp": 1, "upload": 1, "2015": 1, "04": 1, "pdf": 1, "arraid": 1, "ascii": 1, "blacklist": 2, "sanit": 2, "allow": 2, "pre": 2, "flight": 2, "syntax": 2, "well": 2, "manag": 2, "context": 2, "statement": 2, "expect": 2, "forward": 2, "ideal": 2, "univers": 2, "constructor": 2, "granular": 2, "bare": 2, "equival": 2, "trigger": 2, "substitut": 2, "convers": 2, "automat": 2, "correspond": 2, "getexpr_": 2, "nodetransform": 2, "ast": 2, "expres": 2, "spactialpi": 2, "node": 2, "visit_assign": 2, "visitor": 2, "origin": 2, "binop": 2, "boolop": 2, "binboolopop": 2, "otherwis": 2, "compar": 2, "unaryop": 2, "syntaxerror": 2, "imposs": 2, "convet": 2, "built": 2, "_ast": [], "Not": 2, "noteq": 2, "mod": 2, "bitand": 2, "mult": 2, "pow": 2, "sub": 2, "div": 2, "floordiv": 2, "lt": 2, "lshift": 2, "lte": 2, "eq": 2, "gt": 2, "gte": 2, "rshift": 2, "matmult": 2, "bitxor": 2, "And": 2, "Or": 2, "bitor": 2, "so": 2, "far": 2, "ensur": 2, "pars": 2, "against": 2, "addition": 2, "reject": 2, "rvalu": 2, "new": 2, "duplic": 2, "overrid": 2, "handl": 2, "behavior": 2, "copi": 2, "rtype": 2, "present": 2, "caus": 2, "what": 2, "tree": 2, "super": 2, "nodevisitor": 2, "self": 2, "comparison": 2, "last": 2, "mathemat": 2, "right": 2, "visit": 2, "left": 2, "most": 2, "recent": 2, "append": [0, 1, 2], "token": 2, "alwai": 2, "hand": 2, "u": 2, "pop": 2, "process": 2, "assum": 2, "inherit": 2, "byte": 2, "ellipsi": 2, "nameconst": 2, "num": 2, "usub": 2, "invalid_nam": 2, "invalid_oper": 2, "is_valid": 2, "struct": 2, "infer": 2, "invalid_": 2, "verbos": 2, "gdbgui": 2, "debugg": 2, "symbol": 2, "hasn": 2, "happen": 2, "gprof": 2, "avail": [2, 4], "consol": 2, "seri": 2, "exceed": [], "packag": 4, "advect": 4, "problem": 4, "embed": 4, "lagrangian": 4, "dynam": 4, "intend": 4, "replac": 4, "pyurdm": 4, "softwar": 4, "github": 4, "com": 4, "featur": 4, "nsm": 4, "rdme": 4, "static": 4, "sssa": 4, "public": 4, "hybrid": 4, "smooth": 4, "dissip": 4, "algorithm": 4, "drawert": 4, "jacob": 4, "li": 4, "yi": 4, "petzold": 4, "www": 4, "sciencedirect": 4, "scienc": 4, "articl": 4, "pii": 4, "s0021999118307101": 4, "latest": 4, "version": 4, "pypi": 4, "code": 4, "licens": 4, "under": 4, "gnu": 4, "pleas": 4, "regist": 4, "develop": 4, "fund": 4, "nih": 4, "grant": 4, "2r01eb014877": 4, "continu": 4, "we": 4, "prove": 4, "our": 4, "short": 4, "registr": 4, "see": 4, "here": 4, "cylind": 4, "demo": 4, "physic": 4, "flow": 4, "weir": 4, "tracker": 4, "project": 4, "contact": 4, "main": 4, "author": 4, "dr": 4, "brian": 4, "question": 4, "suggest": 4, "subpackag": 4, "modul": 4, "content": 4, "search": 4, "page": 4, "allow_all_typ": 1}, "objects": {"": [[0, 0, 0, "-", "spatialpy"]], "spatialpy": [[1, 0, 0, "-", "core"], [2, 0, 0, "-", "solvers"], [3, 0, 0, "-", "stochss"]], "spatialpy.core": [[1, 1, 1, "", "BoundaryCondition"], [1, 3, 1, "", "BoundaryConditionError"], [1, 1, 1, "", "CartesianLattice"], [1, 1, 1, "", "CombinatoryGeometry"], [1, 1, 1, "", "CylindricalLattice"], [1, 1, 1, "", "DataFunction"], [1, 3, 1, "", "DataFunctionError"], [1, 1, 1, "", "Domain"], [1, 3, 1, "", "DomainError"], [1, 1, 1, "", "Geometry"], [1, 1, 1, "", "GeometryAll"], [1, 3, 1, "", "GeometryError"], [1, 1, 1, "", "GeometryExterior"], [1, 1, 1, "", "GeometryInterior"], [1, 1, 1, "", "InitialCondition"], [1, 3, 1, "", "InitialConditionError"], [1, 3, 1, "", "LatticeError"], [1, 1, 1, "", "MeshIOLattice"], [1, 1, 1, "", "Model"], [1, 3, 1, "", "ModelError"], [1, 1, 1, "", "Parameter"], [1, 3, 1, "", "ParameterError"], [1, 1, 1, "", "PlaceInitialCondition"], [1, 1, 1, "", "Reaction"], [1, 3, 1, "", "ReactionError"], [1, 1, 1, "", "ReflectionTransformation"], [1, 1, 1, "", "Result"], [1, 3, 1, "", "ResultError"], [1, 1, 1, "", "RotationTransformation"], [1, 1, 1, "", "ScalingTransformation"], [1, 1, 1, "", "ScatterInitialCondition"], [1, 3, 1, "", "SimulationError"], [1, 3, 1, "", "SimulationTimeout"], [1, 1, 1, "", "Species"], [1, 3, 1, "", "SpeciesError"], [1, 1, 1, "", "SphericalLattice"], [1, 1, 1, "", "StochSSLattice"], [1, 1, 1, "", "TimeSpan"], [1, 3, 1, "", "TimespanError"], [1, 1, 1, "", "Transformation"], [1, 3, 1, "", "TransformationError"], [1, 1, 1, "", "TranslationTransformation"], [1, 1, 1, "", "UniformInitialCondition"], [1, 1, 1, "", "VTKReader"], [1, 3, 1, "", "VTKReaderError"], [1, 3, 1, "", "VTKReaderIOError"], [1, 1, 1, "", "Visualization"], [1, 3, 1, "", "VisualizationError"], [1, 1, 1, "", "XMLMeshLattice"], [1, 0, 0, "-", "boundarycondition"], [1, 0, 0, "-", "cleanup"], [1, 5, 1, "", "cleanup_build_files"], [1, 5, 1, "", "cleanup_core_files"], [1, 5, 1, "", "cleanup_result_files"], [1, 5, 1, "", "cleanup_tempfiles"], [1, 0, 0, "-", "datafunction"], [1, 0, 0, "-", "domain"], [1, 5, 1, "", "export_StochSS"], [1, 0, 0, "-", "geometry"], [1, 0, 0, "-", "initialcondition"], [1, 0, 0, "-", "lattice"], [1, 0, 0, "-", "model"], [1, 0, 0, "-", "parameter"], [1, 0, 0, "-", "reaction"], [1, 0, 0, "-", "result"], [1, 0, 0, "-", "spatialpyerror"], [1, 0, 0, "-", "species"], [1, 0, 0, "-", "timespan"], [1, 0, 0, "-", "transformation"], [1, 0, 0, "-", "visualization"], [1, 0, 0, "-", "vtkreader"]], "spatialpy.core.BoundaryCondition": [[1, 2, 1, "", "expression"]], "spatialpy.core.CartesianLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.CombinatoryGeometry": [[1, 2, 1, "", "inside"], [1, 2, 1, "", "validate"]], "spatialpy.core.CylindricalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.DataFunction": [[1, 2, 1, "", "map"]], "spatialpy.core.Domain": [[1, 2, 1, "", "add_fill_action"], [1, 2, 1, "", "add_point"], [1, 2, 1, "", "add_remove_action"], [1, 2, 1, "", "add_set_action"], [1, 2, 1, "", "apply_actions"], [1, 2, 1, "", "apply_fill_action"], [1, 2, 1, "", "apply_remove_action"], [1, 2, 1, "", "apply_set_action"], [1, 2, 1, "", "calculate_vol"], [1, 2, 1, "", "closest_vertex"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "coordinates"], [1, 2, 1, "", "create_2D_domain"], [1, 2, 1, "", "create_3D_domain"], [1, 2, 1, "", "distance_between_2_vertices"], [1, 2, 1, "", "fill_with_particles"], [1, 2, 1, "", "find_boundary_points"], [1, 2, 1, "", "find_h"], [1, 2, 1, "", "get_bounding_box"], [1, 2, 1, "", "get_domain_size"], [1, 2, 1, "", "get_num_voxels"], [1, 2, 1, "", "get_type_def"], [1, 2, 1, "", "get_vol"], [1, 2, 1, "", "import_meshio_object"], [1, 2, 1, "", "plot_types"], [1, 2, 1, "", "preview_actions"], [1, 2, 1, "", "read_msh_file"], [1, 2, 1, "", "read_stochss_domain"], [1, 2, 1, "", "read_stochss_subdomain_file"], [1, 2, 1, "", "read_xml_mesh"], [1, 2, 1, "", "set_properties"], [1, 2, 1, "", "validate_action"]], "spatialpy.core.Geometry": [[1, 2, 1, "", "inside"]], "spatialpy.core.GeometryAll": [[1, 2, 1, "", "inside"]], "spatialpy.core.GeometryExterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.GeometryInterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.InitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.MeshIOLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.Model": [[1, 2, 1, "", "add"], [1, 2, 1, "", "add_boundary_condition"], [1, 2, 1, "", "add_data_function"], [1, 2, 1, "", "add_domain"], [1, 2, 1, "", "add_initial_condition"], [1, 2, 1, "", "add_parameter"], [1, 2, 1, "", "add_reaction"], [1, 2, 1, "", "add_species"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "delete_all_boundary_conditions"], [1, 2, 1, "", "delete_all_data_functions"], [1, 2, 1, "", "delete_all_initial_conditions"], [1, 2, 1, "", "delete_all_parameters"], [1, 2, 1, "", "delete_all_reactions"], [1, 2, 1, "", "delete_all_species"], [1, 2, 1, "", "delete_boundary_condition"], [1, 2, 1, "", "delete_data_function"], [1, 2, 1, "", "delete_initial_condition"], [1, 2, 1, "", "delete_parameter"], [1, 2, 1, "", "delete_reaction"], [1, 2, 1, "", "delete_species"], [1, 2, 1, "", "get_all_boundary_conditions"], [1, 2, 1, "", "get_all_data_functions"], [1, 2, 1, "", "get_all_initial_conditions"], [1, 2, 1, "", "get_all_parameters"], [1, 2, 1, "", "get_all_reactions"], [1, 2, 1, "", "get_all_species"], [1, 2, 1, "", "get_data_function"], [1, 2, 1, "", "get_element"], [1, 2, 1, "", "get_num_reactions"], [1, 2, 1, "", "get_num_species"], [1, 2, 1, "", "get_parameter"], [1, 2, 1, "", "get_reaction"], [1, 2, 1, "", "get_species"], [1, 4, 1, "", "reserved_names"], [1, 2, 1, "", "run"], [1, 2, 1, "", "sanitized_data_function_names"], [1, 2, 1, "", "sanitized_parameter_names"], [1, 2, 1, "", "sanitized_species_names"], [1, 2, 1, "", "set_timesteps"], [1, 4, 1, "", "special_characters"], [1, 2, 1, "", "timespan"], [1, 2, 1, "", "update_namespace"]], "spatialpy.core.Parameter": [[1, 2, 1, "", "validate"]], "spatialpy.core.PlaceInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.Reaction": [[1, 2, 1, "", "add_product"], [1, 2, 1, "", "add_reactant"], [1, 2, 1, "", "annotate"], [1, 2, 1, "", "from_json"], [1, 2, 1, "", "initialize"], [1, 2, 1, "", "sanitized_propensity_function"], [1, 2, 1, "", "set_annotation"], [1, 2, 1, "", "set_propensities"], [1, 2, 1, "", "set_rate"], [1, 2, 1, "", "to_dict"], [1, 2, 1, "", "validate"]], "spatialpy.core.ReflectionTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"]], "spatialpy.core.Result": [[1, 2, 1, "", "append"], [1, 2, 1, "", "export_to_csv"], [1, 2, 1, "", "get_property"], [1, 2, 1, "", "get_species"], [1, 2, 1, "", "get_timespan"], [1, 2, 1, "", "plot_property"], [1, 2, 1, "", "plot_species"], [1, 2, 1, "", "read_step"]], "spatialpy.core.RotationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.ScalingTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.ScatterInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.Species": [[1, 2, 1, "", "set_diffusion_coefficient"], [1, 2, 1, "", "validate"]], "spatialpy.core.SphericalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.StochSSLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.TimeSpan": [[1, 2, 1, "", "arange"], [1, 2, 1, "", "linspace"], [1, 2, 1, "", "validate"]], "spatialpy.core.Transformation": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "inside"], [1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.TranslationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.UniformInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.VTKReader": [[1, 2, 1, "", "get_array_name"], [1, 2, 1, "", "get_arrays"], [1, 2, 1, "", "get_num_points"], [1, 2, 1, "", "get_points"], [1, 2, 1, "", "read_file"], [1, 2, 1, "", "set_filename"]], "spatialpy.core.Visualization": [[1, 4, 1, "", "MPL_HEIGHT"], [1, 4, 1, "", "MPL_SIZE"], [1, 4, 1, "", "MPL_WIDTH"], [1, 2, 1, "", "plot_scatter"]], "spatialpy.core.XMLMeshLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.boundarycondition": [[1, 1, 1, "", "BoundaryCondition"]], "spatialpy.core.boundarycondition.BoundaryCondition": [[1, 2, 1, "", "expression"]], "spatialpy.core.cleanup": [[1, 5, 1, "", "cleanup_build_files"], [1, 5, 1, "", "cleanup_core_files"], [1, 5, 1, "", "cleanup_result_files"], [1, 5, 1, "", "cleanup_tempfiles"]], "spatialpy.core.datafunction": [[1, 1, 1, "", "DataFunction"]], "spatialpy.core.datafunction.DataFunction": [[1, 2, 1, "", "map"]], "spatialpy.core.domain": [[1, 1, 1, "", "Domain"]], "spatialpy.core.domain.Domain": [[1, 2, 1, "", "add_fill_action"], [1, 2, 1, "", "add_point"], [1, 2, 1, "", "add_remove_action"], [1, 2, 1, "", "add_set_action"], [1, 2, 1, "", "apply_actions"], [1, 2, 1, "", "apply_fill_action"], [1, 2, 1, "", "apply_remove_action"], [1, 2, 1, "", "apply_set_action"], [1, 2, 1, "", "calculate_vol"], [1, 2, 1, "", "closest_vertex"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "coordinates"], [1, 2, 1, "", "create_2D_domain"], [1, 2, 1, "", "create_3D_domain"], [1, 2, 1, "", "distance_between_2_vertices"], [1, 2, 1, "", "fill_with_particles"], [1, 2, 1, "", "find_boundary_points"], [1, 2, 1, "", "find_h"], [1, 2, 1, "", "get_bounding_box"], [1, 2, 1, "", "get_domain_size"], [1, 2, 1, "", "get_num_voxels"], [1, 2, 1, "", "get_type_def"], [1, 2, 1, "", "get_vol"], [1, 2, 1, "", "import_meshio_object"], [1, 2, 1, "", "plot_types"], [1, 2, 1, "", "preview_actions"], [1, 2, 1, "", "read_msh_file"], [1, 2, 1, "", "read_stochss_domain"], [1, 2, 1, "", "read_stochss_subdomain_file"], [1, 2, 1, "", "read_xml_mesh"], [1, 2, 1, "", "set_properties"], [1, 2, 1, "", "validate_action"]], "spatialpy.core.geometry": [[1, 1, 1, "", "CombinatoryGeometry"], [1, 1, 1, "", "Geometry"], [1, 1, 1, "", "GeometryAll"], [1, 1, 1, "", "GeometryExterior"], [1, 1, 1, "", "GeometryInterior"]], "spatialpy.core.geometry.CombinatoryGeometry": [[1, 2, 1, "", "inside"], [1, 2, 1, "", "validate"]], "spatialpy.core.geometry.Geometry": [[1, 2, 1, "", "inside"]], "spatialpy.core.geometry.GeometryAll": [[1, 2, 1, "", "inside"]], "spatialpy.core.geometry.GeometryExterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.geometry.GeometryInterior": [[1, 2, 1, "", "inside"]], "spatialpy.core.initialcondition": [[1, 1, 1, "", "InitialCondition"], [1, 1, 1, "", "PlaceInitialCondition"], [1, 1, 1, "", "ScatterInitialCondition"], [1, 1, 1, "", "UniformInitialCondition"]], "spatialpy.core.initialcondition.InitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.initialcondition.PlaceInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.initialcondition.ScatterInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.initialcondition.UniformInitialCondition": [[1, 2, 1, "", "apply"]], "spatialpy.core.lattice": [[1, 1, 1, "", "CartesianLattice"], [1, 1, 1, "", "CylindricalLattice"], [1, 1, 1, "", "Lattice"], [1, 1, 1, "", "MeshIOLattice"], [1, 1, 1, "", "SphericalLattice"], [1, 1, 1, "", "StochSSLattice"], [1, 1, 1, "", "XMLMeshLattice"]], "spatialpy.core.lattice.CartesianLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.CylindricalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.Lattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.MeshIOLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.SphericalLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.StochSSLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.lattice.XMLMeshLattice": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "validate"]], "spatialpy.core.model": [[1, 1, 1, "", "Model"], [1, 5, 1, "", "export_StochSS"]], "spatialpy.core.model.Model": [[1, 2, 1, "", "add"], [1, 2, 1, "", "add_boundary_condition"], [1, 2, 1, "", "add_data_function"], [1, 2, 1, "", "add_domain"], [1, 2, 1, "", "add_initial_condition"], [1, 2, 1, "", "add_parameter"], [1, 2, 1, "", "add_reaction"], [1, 2, 1, "", "add_species"], [1, 2, 1, "", "compile_prep"], [1, 2, 1, "", "delete_all_boundary_conditions"], [1, 2, 1, "", "delete_all_data_functions"], [1, 2, 1, "", "delete_all_initial_conditions"], [1, 2, 1, "", "delete_all_parameters"], [1, 2, 1, "", "delete_all_reactions"], [1, 2, 1, "", "delete_all_species"], [1, 2, 1, "", "delete_boundary_condition"], [1, 2, 1, "", "delete_data_function"], [1, 2, 1, "", "delete_initial_condition"], [1, 2, 1, "", "delete_parameter"], [1, 2, 1, "", "delete_reaction"], [1, 2, 1, "", "delete_species"], [1, 2, 1, "", "get_all_boundary_conditions"], [1, 2, 1, "", "get_all_data_functions"], [1, 2, 1, "", "get_all_initial_conditions"], [1, 2, 1, "", "get_all_parameters"], [1, 2, 1, "", "get_all_reactions"], [1, 2, 1, "", "get_all_species"], [1, 2, 1, "", "get_data_function"], [1, 2, 1, "", "get_element"], [1, 2, 1, "", "get_num_reactions"], [1, 2, 1, "", "get_num_species"], [1, 2, 1, "", "get_parameter"], [1, 2, 1, "", "get_reaction"], [1, 2, 1, "", "get_species"], [1, 4, 1, "", "reserved_names"], [1, 2, 1, "", "run"], [1, 2, 1, "", "sanitized_data_function_names"], [1, 2, 1, "", "sanitized_parameter_names"], [1, 2, 1, "", "sanitized_species_names"], [1, 2, 1, "", "set_timesteps"], [1, 4, 1, "", "special_characters"], [1, 2, 1, "", "timespan"], [1, 2, 1, "", "update_namespace"]], "spatialpy.core.parameter": [[1, 1, 1, "", "Parameter"]], "spatialpy.core.parameter.Parameter": [[1, 2, 1, "", "validate"]], "spatialpy.core.reaction": [[1, 1, 1, "", "Reaction"]], "spatialpy.core.reaction.Reaction": [[1, 2, 1, "", "add_product"], [1, 2, 1, "", "add_reactant"], [1, 2, 1, "", "annotate"], [1, 2, 1, "", "from_json"], [1, 2, 1, "", "initialize"], [1, 2, 1, "", "sanitized_propensity_function"], [1, 2, 1, "", "set_annotation"], [1, 2, 1, "", "set_propensities"], [1, 2, 1, "", "set_rate"], [1, 2, 1, "", "to_dict"], [1, 2, 1, "", "validate"]], "spatialpy.core.result": [[1, 1, 1, "", "Result"]], "spatialpy.core.result.Result": [[1, 2, 1, "", "append"], [1, 2, 1, "", "export_to_csv"], [1, 2, 1, "", "get_property"], [1, 2, 1, "", "get_species"], [1, 2, 1, "", "get_timespan"], [1, 2, 1, "", "plot_property"], [1, 2, 1, "", "plot_species"], [1, 2, 1, "", "read_step"]], "spatialpy.core.spatialpyerror": [[1, 3, 1, "", "BoundaryConditionError"], [1, 3, 1, "", "DataFunctionError"], [1, 3, 1, "", "DomainError"], [1, 3, 1, "", "GeometryError"], [1, 3, 1, "", "InitialConditionError"], [1, 3, 1, "", "LatticeError"], [1, 3, 1, "", "ModelError"], [1, 3, 1, "", "ParameterError"], [1, 3, 1, "", "ReactionError"], [1, 3, 1, "", "ResultError"], [1, 3, 1, "", "SimulationError"], [1, 3, 1, "", "SimulationTimeout"], [1, 3, 1, "", "SpeciesError"], [1, 3, 1, "", "TimespanError"], [1, 3, 1, "", "TransformationError"], [1, 3, 1, "", "VTKReaderError"], [1, 3, 1, "", "VTKReaderIOError"], [1, 3, 1, "", "VisualizationError"]], "spatialpy.core.species": [[1, 1, 1, "", "Species"]], "spatialpy.core.species.Species": [[1, 2, 1, "", "set_diffusion_coefficient"], [1, 2, 1, "", "validate"]], "spatialpy.core.timespan": [[1, 1, 1, "", "TimeSpan"]], "spatialpy.core.timespan.TimeSpan": [[1, 2, 1, "", "arange"], [1, 2, 1, "", "linspace"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation": [[1, 1, 1, "", "ReflectionTransformation"], [1, 1, 1, "", "RotationTransformation"], [1, 1, 1, "", "ScalingTransformation"], [1, 1, 1, "", "Transformation"], [1, 1, 1, "", "TranslationTransformation"]], "spatialpy.core.transformation.ReflectionTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"]], "spatialpy.core.transformation.RotationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation.ScalingTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation.Transformation": [[1, 2, 1, "", "apply"], [1, 2, 1, "", "inside"], [1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.transformation.TranslationTransformation": [[1, 2, 1, "", "reverse_transform"], [1, 2, 1, "", "transform"], [1, 2, 1, "", "validate"]], "spatialpy.core.visualization": [[1, 1, 1, "", "Visualization"]], "spatialpy.core.visualization.Visualization": [[1, 4, 1, "", "MPL_HEIGHT"], [1, 4, 1, "", "MPL_SIZE"], [1, 4, 1, "", "MPL_WIDTH"], [1, 2, 1, "", "plot_scatter"]], "spatialpy.core.vtkreader": [[1, 1, 1, "", "VTKReader"]], "spatialpy.core.vtkreader.VTKReader": [[1, 2, 1, "", "get_array_name"], [1, 2, 1, "", "get_arrays"], [1, 2, 1, "", "get_num_points"], [1, 2, 1, "", "get_points"], [1, 2, 1, "", "read_file"], [1, 2, 1, "", "set_filename"]], "spatialpy.solvers": [[2, 0, 0, "-", "build_expression"], [2, 0, 0, "-", "solver"]], "spatialpy.solvers.build_expression": [[2, 1, 1, "", "BuildExpression"], [2, 1, 1, "", "CppConverter"], [2, 1, 1, "", "ExpressionConverter"], [2, 1, 1, "", "ExpressionResults"], [2, 1, 1, "", "PythonConverter"]], "spatialpy.solvers.build_expression.BuildExpression": [[2, 1, 1, "", "ValidationVisitor"], [2, 2, 1, "", "getexpr_cpp"], [2, 2, 1, "", "getexpr_python"], [2, 2, 1, "", "map_operator"], [2, 4, 1, "", "operator_map"], [2, 2, 1, "", "validate"], [2, 2, 1, "", "with_blacklist"], [2, 2, 1, "", "with_namespace"]], "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor": [[2, 2, 1, "", "visit_Assign"], [2, 2, 1, "", "visit_BinOp"], [2, 2, 1, "", "visit_BoolOp"], [2, 2, 1, "", "visit_Call"], [2, 2, 1, "", "visit_Compare"], [2, 2, 1, "", "visit_Name"], [2, 2, 1, "", "visit_UnaryOp"]], "spatialpy.solvers.build_expression.CppConverter": [[2, 1, 1, "", "CppExpressionTransformer"], [2, 2, 1, "", "get_str"], [2, 2, 1, "", "visit_And"], [2, 2, 1, "", "visit_Or"]], "spatialpy.solvers.build_expression.CppConverter.CppExpressionTransformer": [[2, 2, 1, "", "visit_BinOp"]], "spatialpy.solvers.build_expression.ExpressionConverter": [[2, 2, 1, "", "convert_str"], [2, 2, 1, "", "get_str"], [2, 2, 1, "", "parse_comparison"], [2, 2, 1, "", "parse_logical"], [2, 2, 1, "", "parse_operator"], [2, 2, 1, "", "visit_Add"], [2, 2, 1, "", "visit_BinOp"], [2, 2, 1, "", "visit_BoolOp"], [2, 2, 1, "", "visit_Bytes"], [2, 2, 1, "", "visit_Call"], [2, 2, 1, "", "visit_Compare"], [2, 2, 1, "", "visit_Constant"], [2, 2, 1, "", "visit_Div"], [2, 2, 1, "", "visit_Ellipsis"], [2, 2, 1, "", "visit_Eq"], [2, 2, 1, "", "visit_Gt"], [2, 2, 1, "", "visit_GtE"], [2, 2, 1, "", "visit_Lt"], [2, 2, 1, "", "visit_LtE"], [2, 2, 1, "", "visit_Mult"], [2, 2, 1, "", "visit_Name"], [2, 2, 1, "", "visit_NameConstant"], [2, 2, 1, "", "visit_NotEq"], [2, 2, 1, "", "visit_Num"], [2, 2, 1, "", "visit_Pow"], [2, 2, 1, "", "visit_Str"], [2, 2, 1, "", "visit_Sub"], [2, 2, 1, "", "visit_USub"], [2, 2, 1, "", "visit_UnaryOp"]], "spatialpy.solvers.build_expression.PythonConverter": [[2, 2, 1, "", "visit_And"], [2, 2, 1, "", "visit_Or"]], "spatialpy.solvers.solver": [[2, 1, 1, "", "Solver"]], "spatialpy.solvers.solver.Solver": [[2, 2, 1, "", "compile"], [2, 2, 1, "", "run"]], "spatialpy.stochss": [[3, 0, 0, "-", "stochss_export"]], "spatialpy.stochss.stochss_export": [[3, 5, 1, "", "export"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:exception", "4": "py:attribute", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "exception", "Python exception"], "4": ["py", "attribute", "Python attribute"], "5": ["py", "function", "Python function"]}, "titleterms": {"spatialpi": [0, 1, 2, 3, 4], "packag": [0, 1, 2, 3], "subpackag": 0, "modul": [0, 1, 2, 3], "content": [0, 1, 2, 3], "core": 1, "submodul": [1, 2, 3], "boundarycondit": 1, "cleanup": 1, "datafunct": 1, "domain": 1, "geometri": 1, "initialcondit": 1, "lattic": 1, "model": 1, "paramet": 1, "reaction": 1, "result": 1, "spatialpyerror": 1, "speci": 1, "timespan": 1, "transform": 1, "visual": 1, "vtkreader": 1, "solver": 2, "build_express": 2, "stochss": 3, "stochss_export": 3, "document": 4, "1": 4, "2": 4, "get": 4, "copi": 4, "exampl": 4, "report": 4, "issu": 4, "api": 4, "refer": 4, "indic": 4, "tabl": 4, "3": [], "0": []}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx.ext.todo": 2, "sphinx": 57}, "alltitles": {"spatialpy package": [[0, "spatialpy-package"]], "Subpackages": [[0, "subpackages"]], "Module contents": [[0, "module-spatialpy"], [1, "module-spatialpy.core"], [2, "module-spatialpy.solvers"], [3, "module-spatialpy.stochss"]], "spatialpy.core package": [[1, "spatialpy-core-package"]], "Submodules": [[1, "submodules"], [2, "submodules"], [3, "submodules"]], "spatialpy.core.boundarycondition module": [[1, "module-spatialpy.core.boundarycondition"]], "spatialpy.core.cleanup module": [[1, "module-spatialpy.core.cleanup"]], "spatialpy.core.datafunction module": [[1, "module-spatialpy.core.datafunction"]], "spatialpy.core.domain module": [[1, "module-spatialpy.core.domain"]], "spatialpy.core.geometry module": [[1, "module-spatialpy.core.geometry"]], "spatialpy.core.initialcondition module": [[1, "module-spatialpy.core.initialcondition"]], "spatialpy.core.lattice module": [[1, "module-spatialpy.core.lattice"]], "spatialpy.core.model module": [[1, "module-spatialpy.core.model"]], "spatialpy.core.parameter module": [[1, "module-spatialpy.core.parameter"]], "spatialpy.core.reaction module": [[1, "module-spatialpy.core.reaction"]], "spatialpy.core.result module": [[1, "module-spatialpy.core.result"]], "spatialpy.core.spatialpyerror module": [[1, "module-spatialpy.core.spatialpyerror"]], "spatialpy.core.species module": [[1, "module-spatialpy.core.species"]], "spatialpy.core.timespan module": [[1, "module-spatialpy.core.timespan"]], "spatialpy.core.transformation module": [[1, "module-spatialpy.core.transformation"]], "spatialpy.core.visualization module": [[1, "module-spatialpy.core.visualization"]], "spatialpy.core.vtkreader module": [[1, "module-spatialpy.core.vtkreader"]], "spatialpy.solvers package": [[2, "spatialpy-solvers-package"]], "spatialpy.solvers.build_expression module": [[2, "module-spatialpy.solvers.build_expression"]], "spatialpy.solvers.solver module": [[2, "module-spatialpy.solvers.solver"]], "spatialpy.stochss package": [[3, "spatialpy-stochss-package"]], "spatialpy.stochss.stochss_export module": [[3, "module-spatialpy.stochss.stochss_export"]], "Documentation for SpatialPy 1.2.2": [[4, "documentation-for-spatialpy-release"]], "Getting a copy of SpatialPy": [[4, "getting-a-copy-of-spatialpy"]], "Examples": [[4, "examples"]], "Reporting Issues": [[4, "reporting-issues"]], "Documentation": [[4, "documentation"]], "API reference": [[4, null]], "Indices and tables": [[4, "indices-and-tables"]]}, "indexentries": {"module": [[0, "module-spatialpy"], [1, "module-spatialpy.core"], [1, "module-spatialpy.core.boundarycondition"], [1, "module-spatialpy.core.cleanup"], [1, "module-spatialpy.core.datafunction"], [1, "module-spatialpy.core.domain"], [1, "module-spatialpy.core.geometry"], [1, "module-spatialpy.core.initialcondition"], [1, "module-spatialpy.core.lattice"], [1, "module-spatialpy.core.model"], [1, "module-spatialpy.core.parameter"], [1, "module-spatialpy.core.reaction"], [1, "module-spatialpy.core.result"], [1, "module-spatialpy.core.spatialpyerror"], [1, "module-spatialpy.core.species"], [1, "module-spatialpy.core.timespan"], [1, "module-spatialpy.core.transformation"], [1, "module-spatialpy.core.visualization"], [1, "module-spatialpy.core.vtkreader"], [2, "module-spatialpy.solvers"], [2, "module-spatialpy.solvers.build_expression"], [2, "module-spatialpy.solvers.solver"], [3, "module-spatialpy.stochss"], [3, "module-spatialpy.stochss.stochss_export"]], "spatialpy": [[0, "module-spatialpy"]], "boundarycondition (class in spatialpy.core)": [[1, "spatialpy.core.BoundaryCondition"]], "boundarycondition (class in spatialpy.core.boundarycondition)": [[1, "spatialpy.core.boundarycondition.BoundaryCondition"]], "boundaryconditionerror": [[1, "spatialpy.core.BoundaryConditionError"], [1, "spatialpy.core.spatialpyerror.BoundaryConditionError"]], "cartesianlattice (class in spatialpy.core)": [[1, "spatialpy.core.CartesianLattice"]], "cartesianlattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.CartesianLattice"]], "combinatorygeometry (class in spatialpy.core)": [[1, "spatialpy.core.CombinatoryGeometry"]], "combinatorygeometry (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.CombinatoryGeometry"]], "cylindricallattice (class in spatialpy.core)": [[1, "spatialpy.core.CylindricalLattice"]], "cylindricallattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.CylindricalLattice"]], "datafunction (class in spatialpy.core)": [[1, "spatialpy.core.DataFunction"]], "datafunction (class in spatialpy.core.datafunction)": [[1, "spatialpy.core.datafunction.DataFunction"]], "datafunctionerror": [[1, "spatialpy.core.DataFunctionError"], [1, "spatialpy.core.spatialpyerror.DataFunctionError"]], "domain (class in spatialpy.core)": [[1, "spatialpy.core.Domain"]], "domain (class in spatialpy.core.domain)": [[1, "spatialpy.core.domain.Domain"]], "domainerror": [[1, "spatialpy.core.DomainError"], [1, "spatialpy.core.spatialpyerror.DomainError"]], "geometry (class in spatialpy.core)": [[1, "spatialpy.core.Geometry"]], "geometry (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.Geometry"]], "geometryall (class in spatialpy.core)": [[1, "spatialpy.core.GeometryAll"]], "geometryall (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.GeometryAll"]], "geometryerror": [[1, "spatialpy.core.GeometryError"], [1, "spatialpy.core.spatialpyerror.GeometryError"]], "geometryexterior (class in spatialpy.core)": [[1, "spatialpy.core.GeometryExterior"]], "geometryexterior (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.GeometryExterior"]], "geometryinterior (class in spatialpy.core)": [[1, "spatialpy.core.GeometryInterior"]], "geometryinterior (class in spatialpy.core.geometry)": [[1, "spatialpy.core.geometry.GeometryInterior"]], "initialcondition (class in spatialpy.core)": [[1, "spatialpy.core.InitialCondition"]], "initialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.InitialCondition"]], "initialconditionerror": [[1, "spatialpy.core.InitialConditionError"], [1, "spatialpy.core.spatialpyerror.InitialConditionError"]], "lattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.Lattice"]], "latticeerror": [[1, "spatialpy.core.LatticeError"], [1, "spatialpy.core.spatialpyerror.LatticeError"]], "mpl_height (spatialpy.core.visualization attribute)": [[1, "spatialpy.core.Visualization.MPL_HEIGHT"]], "mpl_height (spatialpy.core.visualization.visualization attribute)": [[1, "spatialpy.core.visualization.Visualization.MPL_HEIGHT"]], "mpl_size (spatialpy.core.visualization attribute)": [[1, "spatialpy.core.Visualization.MPL_SIZE"]], "mpl_size (spatialpy.core.visualization.visualization attribute)": [[1, "spatialpy.core.visualization.Visualization.MPL_SIZE"]], "mpl_width (spatialpy.core.visualization attribute)": [[1, "spatialpy.core.Visualization.MPL_WIDTH"]], "mpl_width (spatialpy.core.visualization.visualization attribute)": [[1, "spatialpy.core.visualization.Visualization.MPL_WIDTH"]], "meshiolattice (class in spatialpy.core)": [[1, "spatialpy.core.MeshIOLattice"]], "meshiolattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.MeshIOLattice"]], "model (class in spatialpy.core)": [[1, "spatialpy.core.Model"]], "model (class in spatialpy.core.model)": [[1, "spatialpy.core.model.Model"]], "modelerror": [[1, "spatialpy.core.ModelError"], [1, "spatialpy.core.spatialpyerror.ModelError"]], "parameter (class in spatialpy.core)": [[1, "spatialpy.core.Parameter"]], "parameter (class in spatialpy.core.parameter)": [[1, "spatialpy.core.parameter.Parameter"]], "parametererror": [[1, "spatialpy.core.ParameterError"], [1, "spatialpy.core.spatialpyerror.ParameterError"]], "placeinitialcondition (class in spatialpy.core)": [[1, "spatialpy.core.PlaceInitialCondition"]], "placeinitialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.PlaceInitialCondition"]], "reaction (class in spatialpy.core)": [[1, "spatialpy.core.Reaction"]], "reaction (class in spatialpy.core.reaction)": [[1, "spatialpy.core.reaction.Reaction"]], "reactionerror": [[1, "spatialpy.core.ReactionError"], [1, "spatialpy.core.spatialpyerror.ReactionError"]], "reflectiontransformation (class in spatialpy.core)": [[1, "spatialpy.core.ReflectionTransformation"]], "reflectiontransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.ReflectionTransformation"]], "result (class in spatialpy.core)": [[1, "spatialpy.core.Result"]], "result (class in spatialpy.core.result)": [[1, "spatialpy.core.result.Result"]], "resulterror": [[1, "spatialpy.core.ResultError"], [1, "spatialpy.core.spatialpyerror.ResultError"]], "rotationtransformation (class in spatialpy.core)": [[1, "spatialpy.core.RotationTransformation"]], "rotationtransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.RotationTransformation"]], "scalingtransformation (class in spatialpy.core)": [[1, "spatialpy.core.ScalingTransformation"]], "scalingtransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.ScalingTransformation"]], "scatterinitialcondition (class in spatialpy.core)": [[1, "spatialpy.core.ScatterInitialCondition"]], "scatterinitialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.ScatterInitialCondition"]], "simulationerror": [[1, "spatialpy.core.SimulationError"], [1, "spatialpy.core.spatialpyerror.SimulationError"]], "simulationtimeout": [[1, "spatialpy.core.SimulationTimeout"], [1, "spatialpy.core.spatialpyerror.SimulationTimeout"]], "species (class in spatialpy.core)": [[1, "spatialpy.core.Species"]], "species (class in spatialpy.core.species)": [[1, "spatialpy.core.species.Species"]], "specieserror": [[1, "spatialpy.core.SpeciesError"], [1, "spatialpy.core.spatialpyerror.SpeciesError"]], "sphericallattice (class in spatialpy.core)": [[1, "spatialpy.core.SphericalLattice"]], "sphericallattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.SphericalLattice"]], "stochsslattice (class in spatialpy.core)": [[1, "spatialpy.core.StochSSLattice"]], "stochsslattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.StochSSLattice"]], "timespan (class in spatialpy.core)": [[1, "spatialpy.core.TimeSpan"]], "timespan (class in spatialpy.core.timespan)": [[1, "spatialpy.core.timespan.TimeSpan"]], "timespanerror": [[1, "spatialpy.core.TimespanError"], [1, "spatialpy.core.spatialpyerror.TimespanError"]], "transformation (class in spatialpy.core)": [[1, "spatialpy.core.Transformation"]], "transformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.Transformation"]], "transformationerror": [[1, "spatialpy.core.TransformationError"], [1, "spatialpy.core.spatialpyerror.TransformationError"]], "translationtransformation (class in spatialpy.core)": [[1, "spatialpy.core.TranslationTransformation"]], "translationtransformation (class in spatialpy.core.transformation)": [[1, "spatialpy.core.transformation.TranslationTransformation"]], "uniforminitialcondition (class in spatialpy.core)": [[1, "spatialpy.core.UniformInitialCondition"]], "uniforminitialcondition (class in spatialpy.core.initialcondition)": [[1, "spatialpy.core.initialcondition.UniformInitialCondition"]], "vtkreader (class in spatialpy.core)": [[1, "spatialpy.core.VTKReader"]], "vtkreader (class in spatialpy.core.vtkreader)": [[1, "spatialpy.core.vtkreader.VTKReader"]], "vtkreadererror": [[1, "spatialpy.core.VTKReaderError"], [1, "spatialpy.core.spatialpyerror.VTKReaderError"]], "vtkreaderioerror": [[1, "spatialpy.core.VTKReaderIOError"], [1, "spatialpy.core.spatialpyerror.VTKReaderIOError"]], "visualization (class in spatialpy.core)": [[1, "spatialpy.core.Visualization"]], "visualization (class in spatialpy.core.visualization)": [[1, "spatialpy.core.visualization.Visualization"]], "visualizationerror": [[1, "spatialpy.core.VisualizationError"], [1, "spatialpy.core.spatialpyerror.VisualizationError"]], "xmlmeshlattice (class in spatialpy.core)": [[1, "spatialpy.core.XMLMeshLattice"]], "xmlmeshlattice (class in spatialpy.core.lattice)": [[1, "spatialpy.core.lattice.XMLMeshLattice"]], "add() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add"]], "add() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add"]], "add_boundary_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_boundary_condition"]], "add_boundary_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_boundary_condition"]], "add_data_function() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_data_function"]], "add_data_function() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_data_function"]], "add_domain() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_domain"]], "add_domain() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_domain"]], "add_fill_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_fill_action"]], "add_fill_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_fill_action"]], "add_initial_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_initial_condition"]], "add_initial_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_initial_condition"]], "add_parameter() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_parameter"]], "add_parameter() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_parameter"]], "add_point() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_point"]], "add_point() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_point"]], "add_product() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.add_product"]], "add_product() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.add_product"]], "add_reactant() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.add_reactant"]], "add_reactant() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.add_reactant"]], "add_reaction() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_reaction"]], "add_reaction() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_reaction"]], "add_remove_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_remove_action"]], "add_remove_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_remove_action"]], "add_set_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.add_set_action"]], "add_set_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.add_set_action"]], "add_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.add_species"]], "add_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.add_species"]], "annotate() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.annotate"]], "annotate() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.annotate"]], "append() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.append"]], "append() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.append"]], "apply() (spatialpy.core.cartesianlattice method)": [[1, "spatialpy.core.CartesianLattice.apply"]], "apply() (spatialpy.core.cylindricallattice method)": [[1, "spatialpy.core.CylindricalLattice.apply"]], "apply() (spatialpy.core.initialcondition method)": [[1, "spatialpy.core.InitialCondition.apply"]], "apply() (spatialpy.core.meshiolattice method)": [[1, "spatialpy.core.MeshIOLattice.apply"]], "apply() (spatialpy.core.placeinitialcondition method)": [[1, "spatialpy.core.PlaceInitialCondition.apply"]], "apply() (spatialpy.core.scatterinitialcondition method)": [[1, "spatialpy.core.ScatterInitialCondition.apply"]], "apply() (spatialpy.core.sphericallattice method)": [[1, "spatialpy.core.SphericalLattice.apply"]], "apply() (spatialpy.core.stochsslattice method)": [[1, "spatialpy.core.StochSSLattice.apply"]], "apply() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.apply"]], "apply() (spatialpy.core.uniforminitialcondition method)": [[1, "spatialpy.core.UniformInitialCondition.apply"]], "apply() (spatialpy.core.xmlmeshlattice method)": [[1, "spatialpy.core.XMLMeshLattice.apply"]], "apply() (spatialpy.core.initialcondition.initialcondition method)": [[1, "spatialpy.core.initialcondition.InitialCondition.apply"]], "apply() (spatialpy.core.initialcondition.placeinitialcondition method)": [[1, "spatialpy.core.initialcondition.PlaceInitialCondition.apply"]], "apply() (spatialpy.core.initialcondition.scatterinitialcondition method)": [[1, "spatialpy.core.initialcondition.ScatterInitialCondition.apply"]], "apply() (spatialpy.core.initialcondition.uniforminitialcondition method)": [[1, "spatialpy.core.initialcondition.UniformInitialCondition.apply"]], "apply() (spatialpy.core.lattice.cartesianlattice method)": [[1, "spatialpy.core.lattice.CartesianLattice.apply"]], "apply() (spatialpy.core.lattice.cylindricallattice method)": [[1, "spatialpy.core.lattice.CylindricalLattice.apply"]], "apply() (spatialpy.core.lattice.lattice method)": [[1, "spatialpy.core.lattice.Lattice.apply"]], "apply() (spatialpy.core.lattice.meshiolattice method)": [[1, "spatialpy.core.lattice.MeshIOLattice.apply"]], "apply() (spatialpy.core.lattice.sphericallattice method)": [[1, "spatialpy.core.lattice.SphericalLattice.apply"]], "apply() (spatialpy.core.lattice.stochsslattice method)": [[1, "spatialpy.core.lattice.StochSSLattice.apply"]], "apply() (spatialpy.core.lattice.xmlmeshlattice method)": [[1, "spatialpy.core.lattice.XMLMeshLattice.apply"]], "apply() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.apply"]], "apply_actions() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_actions"]], "apply_actions() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_actions"]], "apply_fill_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_fill_action"]], "apply_fill_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_fill_action"]], "apply_remove_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_remove_action"]], "apply_remove_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_remove_action"]], "apply_set_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.apply_set_action"]], "apply_set_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.apply_set_action"]], "arange() (spatialpy.core.timespan class method)": [[1, "spatialpy.core.TimeSpan.arange"]], "arange() (spatialpy.core.timespan.timespan class method)": [[1, "spatialpy.core.timespan.TimeSpan.arange"]], "calculate_vol() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.calculate_vol"]], "calculate_vol() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.calculate_vol"]], "cleanup_build_files() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_build_files"]], "cleanup_build_files() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_build_files"]], "cleanup_core_files() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_core_files"]], "cleanup_core_files() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_core_files"]], "cleanup_result_files() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_result_files"]], "cleanup_result_files() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_result_files"]], "cleanup_tempfiles() (in module spatialpy.core)": [[1, "spatialpy.core.cleanup_tempfiles"]], "cleanup_tempfiles() (in module spatialpy.core.cleanup)": [[1, "spatialpy.core.cleanup.cleanup_tempfiles"]], "closest_vertex() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.closest_vertex"]], "closest_vertex() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.closest_vertex"]], "compile_prep() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.compile_prep"]], "compile_prep() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.compile_prep"]], "compile_prep() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.compile_prep"]], "compile_prep() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.compile_prep"]], "coordinates() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.coordinates"]], "coordinates() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.coordinates"]], "create_2d_domain() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.create_2D_domain"]], "create_2d_domain() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.create_2D_domain"]], "create_3d_domain() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.create_3D_domain"]], "create_3d_domain() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.create_3D_domain"]], "delete_all_boundary_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_boundary_conditions"]], "delete_all_boundary_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_boundary_conditions"]], "delete_all_data_functions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_data_functions"]], "delete_all_data_functions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_data_functions"]], "delete_all_initial_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_initial_conditions"]], "delete_all_initial_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_initial_conditions"]], "delete_all_parameters() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_parameters"]], "delete_all_parameters() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_parameters"]], "delete_all_reactions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_reactions"]], "delete_all_reactions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_reactions"]], "delete_all_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_all_species"]], "delete_all_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_all_species"]], "delete_boundary_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_boundary_condition"]], "delete_boundary_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_boundary_condition"]], "delete_data_function() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_data_function"]], "delete_data_function() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_data_function"]], "delete_initial_condition() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_initial_condition"]], "delete_initial_condition() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_initial_condition"]], "delete_parameter() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_parameter"]], "delete_parameter() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_parameter"]], "delete_reaction() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_reaction"]], "delete_reaction() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_reaction"]], "delete_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.delete_species"]], "delete_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.delete_species"]], "distance_between_2_vertices() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.distance_between_2_vertices"]], "distance_between_2_vertices() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.distance_between_2_vertices"]], "export_stochss() (in module spatialpy.core)": [[1, "spatialpy.core.export_StochSS"]], "export_stochss() (in module spatialpy.core.model)": [[1, "spatialpy.core.model.export_StochSS"]], "export_to_csv() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.export_to_csv"]], "export_to_csv() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.export_to_csv"]], "expression() (spatialpy.core.boundarycondition method)": [[1, "spatialpy.core.BoundaryCondition.expression"]], "expression() (spatialpy.core.boundarycondition.boundarycondition method)": [[1, "spatialpy.core.boundarycondition.BoundaryCondition.expression"]], "fill_with_particles() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.fill_with_particles"]], "fill_with_particles() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.fill_with_particles"]], "find_boundary_points() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.find_boundary_points"]], "find_boundary_points() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.find_boundary_points"]], "find_h() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.find_h"]], "find_h() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.find_h"]], "from_json() (spatialpy.core.reaction class method)": [[1, "spatialpy.core.Reaction.from_json"]], "from_json() (spatialpy.core.reaction.reaction class method)": [[1, "spatialpy.core.reaction.Reaction.from_json"]], "get_all_boundary_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_boundary_conditions"]], "get_all_boundary_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_boundary_conditions"]], "get_all_data_functions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_data_functions"]], "get_all_data_functions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_data_functions"]], "get_all_initial_conditions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_initial_conditions"]], "get_all_initial_conditions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_initial_conditions"]], "get_all_parameters() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_parameters"]], "get_all_parameters() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_parameters"]], "get_all_reactions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_reactions"]], "get_all_reactions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_reactions"]], "get_all_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_all_species"]], "get_all_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_all_species"]], "get_array_name() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_array_name"]], "get_array_name() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_array_name"]], "get_arrays() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_arrays"]], "get_arrays() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_arrays"]], "get_bounding_box() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_bounding_box"]], "get_bounding_box() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_bounding_box"]], "get_data_function() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_data_function"]], "get_data_function() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_data_function"]], "get_domain_size() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_domain_size"]], "get_domain_size() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_domain_size"]], "get_element() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_element"]], "get_element() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_element"]], "get_num_points() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_num_points"]], "get_num_points() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_num_points"]], "get_num_reactions() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_num_reactions"]], "get_num_reactions() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_num_reactions"]], "get_num_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_num_species"]], "get_num_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_num_species"]], "get_num_voxels() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_num_voxels"]], "get_num_voxels() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_num_voxels"]], "get_parameter() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_parameter"]], "get_parameter() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_parameter"]], "get_points() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.get_points"]], "get_points() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.get_points"]], "get_property() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.get_property"]], "get_property() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.get_property"]], "get_reaction() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_reaction"]], "get_reaction() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_reaction"]], "get_species() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.get_species"]], "get_species() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.get_species"]], "get_species() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.get_species"]], "get_species() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.get_species"]], "get_timespan() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.get_timespan"]], "get_timespan() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.get_timespan"]], "get_type_def() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_type_def"]], "get_type_def() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_type_def"]], "get_vol() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.get_vol"]], "get_vol() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.get_vol"]], "import_meshio_object() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.import_meshio_object"]], "import_meshio_object() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.import_meshio_object"]], "initialize() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.initialize"]], "initialize() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.initialize"]], "inside() (spatialpy.core.combinatorygeometry method)": [[1, "spatialpy.core.CombinatoryGeometry.inside"]], "inside() (spatialpy.core.geometry method)": [[1, "spatialpy.core.Geometry.inside"]], "inside() (spatialpy.core.geometryall method)": [[1, "spatialpy.core.GeometryAll.inside"]], "inside() (spatialpy.core.geometryexterior method)": [[1, "spatialpy.core.GeometryExterior.inside"]], "inside() (spatialpy.core.geometryinterior method)": [[1, "spatialpy.core.GeometryInterior.inside"]], "inside() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.inside"]], "inside() (spatialpy.core.geometry.combinatorygeometry method)": [[1, "spatialpy.core.geometry.CombinatoryGeometry.inside"]], "inside() (spatialpy.core.geometry.geometry method)": [[1, "spatialpy.core.geometry.Geometry.inside"]], "inside() (spatialpy.core.geometry.geometryall method)": [[1, "spatialpy.core.geometry.GeometryAll.inside"]], "inside() (spatialpy.core.geometry.geometryexterior method)": [[1, "spatialpy.core.geometry.GeometryExterior.inside"]], "inside() (spatialpy.core.geometry.geometryinterior method)": [[1, "spatialpy.core.geometry.GeometryInterior.inside"]], "inside() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.inside"]], "linspace() (spatialpy.core.timespan class method)": [[1, "spatialpy.core.TimeSpan.linspace"]], "linspace() (spatialpy.core.timespan.timespan class method)": [[1, "spatialpy.core.timespan.TimeSpan.linspace"]], "map() (spatialpy.core.datafunction method)": [[1, "spatialpy.core.DataFunction.map"]], "map() (spatialpy.core.datafunction.datafunction method)": [[1, "spatialpy.core.datafunction.DataFunction.map"]], "plot_property() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.plot_property"]], "plot_property() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.plot_property"]], "plot_scatter() (spatialpy.core.visualization method)": [[1, "spatialpy.core.Visualization.plot_scatter"]], "plot_scatter() (spatialpy.core.visualization.visualization method)": [[1, "spatialpy.core.visualization.Visualization.plot_scatter"]], "plot_species() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.plot_species"]], "plot_species() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.plot_species"]], "plot_types() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.plot_types"]], "plot_types() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.plot_types"]], "preview_actions() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.preview_actions"]], "preview_actions() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.preview_actions"]], "read_file() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.read_file"]], "read_file() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.read_file"]], "read_msh_file() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.read_msh_file"]], "read_msh_file() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.read_msh_file"]], "read_step() (spatialpy.core.result method)": [[1, "spatialpy.core.Result.read_step"]], "read_step() (spatialpy.core.result.result method)": [[1, "spatialpy.core.result.Result.read_step"]], "read_stochss_domain() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.read_stochss_domain"]], "read_stochss_domain() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.read_stochss_domain"]], "read_stochss_subdomain_file() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.read_stochss_subdomain_file"]], "read_stochss_subdomain_file() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.read_stochss_subdomain_file"]], "read_xml_mesh() (spatialpy.core.domain class method)": [[1, "spatialpy.core.Domain.read_xml_mesh"]], "read_xml_mesh() (spatialpy.core.domain.domain class method)": [[1, "spatialpy.core.domain.Domain.read_xml_mesh"]], "reserved_names (spatialpy.core.model attribute)": [[1, "spatialpy.core.Model.reserved_names"]], "reserved_names (spatialpy.core.model.model attribute)": [[1, "spatialpy.core.model.Model.reserved_names"]], "reverse_transform() (spatialpy.core.reflectiontransformation method)": [[1, "spatialpy.core.ReflectionTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.rotationtransformation method)": [[1, "spatialpy.core.RotationTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.scalingtransformation method)": [[1, "spatialpy.core.ScalingTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.reverse_transform"]], "reverse_transform() (spatialpy.core.translationtransformation method)": [[1, "spatialpy.core.TranslationTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.reflectiontransformation method)": [[1, "spatialpy.core.transformation.ReflectionTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.rotationtransformation method)": [[1, "spatialpy.core.transformation.RotationTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.scalingtransformation method)": [[1, "spatialpy.core.transformation.ScalingTransformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.reverse_transform"]], "reverse_transform() (spatialpy.core.transformation.translationtransformation method)": [[1, "spatialpy.core.transformation.TranslationTransformation.reverse_transform"]], "run() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.run"]], "run() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.run"]], "sanitized_data_function_names() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.sanitized_data_function_names"]], "sanitized_data_function_names() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.sanitized_data_function_names"]], "sanitized_parameter_names() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.sanitized_parameter_names"]], "sanitized_parameter_names() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.sanitized_parameter_names"]], "sanitized_propensity_function() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.sanitized_propensity_function"]], "sanitized_propensity_function() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.sanitized_propensity_function"]], "sanitized_species_names() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.sanitized_species_names"]], "sanitized_species_names() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.sanitized_species_names"]], "set_annotation() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.set_annotation"]], "set_annotation() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.set_annotation"]], "set_diffusion_coefficient() (spatialpy.core.species method)": [[1, "spatialpy.core.Species.set_diffusion_coefficient"]], "set_diffusion_coefficient() (spatialpy.core.species.species method)": [[1, "spatialpy.core.species.Species.set_diffusion_coefficient"]], "set_filename() (spatialpy.core.vtkreader method)": [[1, "spatialpy.core.VTKReader.set_filename"]], "set_filename() (spatialpy.core.vtkreader.vtkreader method)": [[1, "spatialpy.core.vtkreader.VTKReader.set_filename"]], "set_propensities() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.set_propensities"]], "set_propensities() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.set_propensities"]], "set_properties() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.set_properties"]], "set_properties() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.set_properties"]], "set_rate() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.set_rate"]], "set_rate() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.set_rate"]], "set_timesteps() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.set_timesteps"]], "set_timesteps() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.set_timesteps"]], "spatialpy.core": [[1, "module-spatialpy.core"]], "spatialpy.core.boundarycondition": [[1, "module-spatialpy.core.boundarycondition"]], "spatialpy.core.cleanup": [[1, "module-spatialpy.core.cleanup"]], "spatialpy.core.datafunction": [[1, "module-spatialpy.core.datafunction"]], "spatialpy.core.domain": [[1, "module-spatialpy.core.domain"]], "spatialpy.core.geometry": [[1, "module-spatialpy.core.geometry"]], "spatialpy.core.initialcondition": [[1, "module-spatialpy.core.initialcondition"]], "spatialpy.core.lattice": [[1, "module-spatialpy.core.lattice"]], "spatialpy.core.model": [[1, "module-spatialpy.core.model"]], "spatialpy.core.parameter": [[1, "module-spatialpy.core.parameter"]], "spatialpy.core.reaction": [[1, "module-spatialpy.core.reaction"]], "spatialpy.core.result": [[1, "module-spatialpy.core.result"]], "spatialpy.core.spatialpyerror": [[1, "module-spatialpy.core.spatialpyerror"]], "spatialpy.core.species": [[1, "module-spatialpy.core.species"]], "spatialpy.core.timespan": [[1, "module-spatialpy.core.timespan"]], "spatialpy.core.transformation": [[1, "module-spatialpy.core.transformation"]], "spatialpy.core.visualization": [[1, "module-spatialpy.core.visualization"]], "spatialpy.core.vtkreader": [[1, "module-spatialpy.core.vtkreader"]], "special_characters (spatialpy.core.model attribute)": [[1, "spatialpy.core.Model.special_characters"]], "special_characters (spatialpy.core.model.model attribute)": [[1, "spatialpy.core.model.Model.special_characters"]], "timespan() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.timespan"]], "timespan() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.timespan"]], "to_dict() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.to_dict"]], "to_dict() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.to_dict"]], "transform() (spatialpy.core.reflectiontransformation method)": [[1, "spatialpy.core.ReflectionTransformation.transform"]], "transform() (spatialpy.core.rotationtransformation method)": [[1, "spatialpy.core.RotationTransformation.transform"]], "transform() (spatialpy.core.scalingtransformation method)": [[1, "spatialpy.core.ScalingTransformation.transform"]], "transform() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.transform"]], "transform() (spatialpy.core.translationtransformation method)": [[1, "spatialpy.core.TranslationTransformation.transform"]], "transform() (spatialpy.core.transformation.reflectiontransformation method)": [[1, "spatialpy.core.transformation.ReflectionTransformation.transform"]], "transform() (spatialpy.core.transformation.rotationtransformation method)": [[1, "spatialpy.core.transformation.RotationTransformation.transform"]], "transform() (spatialpy.core.transformation.scalingtransformation method)": [[1, "spatialpy.core.transformation.ScalingTransformation.transform"]], "transform() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.transform"]], "transform() (spatialpy.core.transformation.translationtransformation method)": [[1, "spatialpy.core.transformation.TranslationTransformation.transform"]], "update_namespace() (spatialpy.core.model method)": [[1, "spatialpy.core.Model.update_namespace"]], "update_namespace() (spatialpy.core.model.model method)": [[1, "spatialpy.core.model.Model.update_namespace"]], "validate() (spatialpy.core.cartesianlattice method)": [[1, "spatialpy.core.CartesianLattice.validate"]], "validate() (spatialpy.core.combinatorygeometry method)": [[1, "spatialpy.core.CombinatoryGeometry.validate"]], "validate() (spatialpy.core.cylindricallattice method)": [[1, "spatialpy.core.CylindricalLattice.validate"]], "validate() (spatialpy.core.meshiolattice method)": [[1, "spatialpy.core.MeshIOLattice.validate"]], "validate() (spatialpy.core.parameter method)": [[1, "spatialpy.core.Parameter.validate"]], "validate() (spatialpy.core.reaction method)": [[1, "spatialpy.core.Reaction.validate"]], "validate() (spatialpy.core.rotationtransformation method)": [[1, "spatialpy.core.RotationTransformation.validate"]], "validate() (spatialpy.core.scalingtransformation method)": [[1, "spatialpy.core.ScalingTransformation.validate"]], "validate() (spatialpy.core.species method)": [[1, "spatialpy.core.Species.validate"]], "validate() (spatialpy.core.sphericallattice method)": [[1, "spatialpy.core.SphericalLattice.validate"]], "validate() (spatialpy.core.stochsslattice method)": [[1, "spatialpy.core.StochSSLattice.validate"]], "validate() (spatialpy.core.timespan method)": [[1, "spatialpy.core.TimeSpan.validate"]], "validate() (spatialpy.core.transformation method)": [[1, "spatialpy.core.Transformation.validate"]], "validate() (spatialpy.core.translationtransformation method)": [[1, "spatialpy.core.TranslationTransformation.validate"]], "validate() (spatialpy.core.xmlmeshlattice method)": [[1, "spatialpy.core.XMLMeshLattice.validate"]], "validate() (spatialpy.core.geometry.combinatorygeometry method)": [[1, "spatialpy.core.geometry.CombinatoryGeometry.validate"]], "validate() (spatialpy.core.lattice.cartesianlattice method)": [[1, "spatialpy.core.lattice.CartesianLattice.validate"]], "validate() (spatialpy.core.lattice.cylindricallattice method)": [[1, "spatialpy.core.lattice.CylindricalLattice.validate"]], "validate() (spatialpy.core.lattice.lattice method)": [[1, "spatialpy.core.lattice.Lattice.validate"]], "validate() (spatialpy.core.lattice.meshiolattice method)": [[1, "spatialpy.core.lattice.MeshIOLattice.validate"]], "validate() (spatialpy.core.lattice.sphericallattice method)": [[1, "spatialpy.core.lattice.SphericalLattice.validate"]], "validate() (spatialpy.core.lattice.stochsslattice method)": [[1, "spatialpy.core.lattice.StochSSLattice.validate"]], "validate() (spatialpy.core.lattice.xmlmeshlattice method)": [[1, "spatialpy.core.lattice.XMLMeshLattice.validate"]], "validate() (spatialpy.core.parameter.parameter method)": [[1, "spatialpy.core.parameter.Parameter.validate"]], "validate() (spatialpy.core.reaction.reaction method)": [[1, "spatialpy.core.reaction.Reaction.validate"]], "validate() (spatialpy.core.species.species method)": [[1, "spatialpy.core.species.Species.validate"]], "validate() (spatialpy.core.timespan.timespan method)": [[1, "spatialpy.core.timespan.TimeSpan.validate"]], "validate() (spatialpy.core.transformation.rotationtransformation method)": [[1, "spatialpy.core.transformation.RotationTransformation.validate"]], "validate() (spatialpy.core.transformation.scalingtransformation method)": [[1, "spatialpy.core.transformation.ScalingTransformation.validate"]], "validate() (spatialpy.core.transformation.transformation method)": [[1, "spatialpy.core.transformation.Transformation.validate"]], "validate() (spatialpy.core.transformation.translationtransformation method)": [[1, "spatialpy.core.transformation.TranslationTransformation.validate"]], "validate_action() (spatialpy.core.domain method)": [[1, "spatialpy.core.Domain.validate_action"]], "validate_action() (spatialpy.core.domain.domain method)": [[1, "spatialpy.core.domain.Domain.validate_action"]], "buildexpression (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.BuildExpression"]], "buildexpression.validationvisitor (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor"]], "cppconverter (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.CppConverter"]], "cppconverter.cppexpressiontransformer (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.CppConverter.CppExpressionTransformer"]], "expressionconverter (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter"]], "expressionresults (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.ExpressionResults"]], "pythonconverter (class in spatialpy.solvers.build_expression)": [[2, "spatialpy.solvers.build_expression.PythonConverter"]], "solver (class in spatialpy.solvers.solver)": [[2, "spatialpy.solvers.solver.Solver"]], "compile() (spatialpy.solvers.solver.solver method)": [[2, "spatialpy.solvers.solver.Solver.compile"]], "convert_str() (spatialpy.solvers.build_expression.expressionconverter class method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.convert_str"]], "get_str() (spatialpy.solvers.build_expression.cppconverter method)": [[2, "spatialpy.solvers.build_expression.CppConverter.get_str"]], "get_str() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.get_str"]], "getexpr_cpp() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.getexpr_cpp"]], "getexpr_python() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.getexpr_python"]], "map_operator() (spatialpy.solvers.build_expression.buildexpression class method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.map_operator"]], "operator_map (spatialpy.solvers.build_expression.buildexpression attribute)": [[2, "spatialpy.solvers.build_expression.BuildExpression.operator_map"]], "parse_comparison() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.parse_comparison"]], "parse_logical() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.parse_logical"]], "parse_operator() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.parse_operator"]], "run() (spatialpy.solvers.solver.solver method)": [[2, "spatialpy.solvers.solver.Solver.run"]], "spatialpy.solvers": [[2, "module-spatialpy.solvers"]], "spatialpy.solvers.build_expression": [[2, "module-spatialpy.solvers.build_expression"]], "spatialpy.solvers.solver": [[2, "module-spatialpy.solvers.solver"]], "validate() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.validate"]], "visit_add() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Add"]], "visit_and() (spatialpy.solvers.build_expression.cppconverter method)": [[2, "spatialpy.solvers.build_expression.CppConverter.visit_And"]], "visit_and() (spatialpy.solvers.build_expression.pythonconverter method)": [[2, "spatialpy.solvers.build_expression.PythonConverter.visit_And"]], "visit_assign() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Assign"]], "visit_binop() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_BinOp"]], "visit_binop() (spatialpy.solvers.build_expression.cppconverter.cppexpressiontransformer method)": [[2, "spatialpy.solvers.build_expression.CppConverter.CppExpressionTransformer.visit_BinOp"]], "visit_binop() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_BinOp"]], "visit_boolop() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_BoolOp"]], "visit_boolop() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_BoolOp"]], "visit_bytes() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Bytes"]], "visit_call() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Call"]], "visit_call() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Call"]], "visit_compare() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Compare"]], "visit_compare() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Compare"]], "visit_constant() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Constant"]], "visit_div() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Div"]], "visit_ellipsis() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Ellipsis"]], "visit_eq() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Eq"]], "visit_gt() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Gt"]], "visit_gte() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_GtE"]], "visit_lt() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Lt"]], "visit_lte() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_LtE"]], "visit_mult() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Mult"]], "visit_name() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_Name"]], "visit_name() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Name"]], "visit_nameconstant() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_NameConstant"]], "visit_noteq() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_NotEq"]], "visit_num() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Num"]], "visit_or() (spatialpy.solvers.build_expression.cppconverter method)": [[2, "spatialpy.solvers.build_expression.CppConverter.visit_Or"]], "visit_or() (spatialpy.solvers.build_expression.pythonconverter method)": [[2, "spatialpy.solvers.build_expression.PythonConverter.visit_Or"]], "visit_pow() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Pow"]], "visit_str() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Str"]], "visit_sub() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_Sub"]], "visit_usub() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_USub"]], "visit_unaryop() (spatialpy.solvers.build_expression.buildexpression.validationvisitor method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.ValidationVisitor.visit_UnaryOp"]], "visit_unaryop() (spatialpy.solvers.build_expression.expressionconverter method)": [[2, "spatialpy.solvers.build_expression.ExpressionConverter.visit_UnaryOp"]], "with_blacklist() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.with_blacklist"]], "with_namespace() (spatialpy.solvers.build_expression.buildexpression method)": [[2, "spatialpy.solvers.build_expression.BuildExpression.with_namespace"]], "export() (in module spatialpy.stochss.stochss_export)": [[3, "spatialpy.stochss.stochss_export.export"]], "spatialpy.stochss": [[3, "module-spatialpy.stochss"]], "spatialpy.stochss.stochss_export": [[3, "module-spatialpy.stochss.stochss_export"]]}})
\ No newline at end of file
diff --git a/examples/mdippel.ipynb b/examples/mdippel.ipynb
new file mode 100644
index 00000000..5884b0e9
--- /dev/null
+++ b/examples/mdippel.ipynb
@@ -0,0 +1,6837 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# Introduction\n",
+ "***\n",
+ "Running a simmulation with SpatialPy requires only 2 components: a model (data), and a solver (algorithm).\n",
+ "***\n",
+ "### Setup the Environment\n",
+ "***\n",
+ "'os' and 'sys' allow us to modify the directory Python searches for source code. If you wish to use an installed SpatialPy package, you do not need to run this cell. If this notebook is being run from within the SpatialPy source code directory we need to let Python know that we want to use it, not the SpatialPy package."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import os\n",
+ "import sys\n",
+ "sys.path.insert(1, os.path.abspath(os.path.join(os.getcwd(), '../')))"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Import the types that'll be needed to define your Model."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import spatialpy"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "***\n",
+ "## Creating a SpatialPy Model\n",
+ "***\n",
+ "A SpatialPy model must include a domain, which may be fixed (not moving) or subject to fluid motion (SDPD method).\n",
+ "To add a biochemical network the model must also include Species, Parameters, Initial Conditions, and Reactions.\n",
+ "\n",
+ "Your model is declared and configured as a Python class. As such, the name can be of your choosing. For this example we'll be modeling Spatial Birth and Death, so lets set the name accordingly."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "def create_birth_death(parameter_values=None):\n",
+ " # Intialize the Model with a name of your choosing.\n",
+ " model = spatialpy.Model(name='Spatial Birth-Death')\n",
+ " \n",
+ " # Define Domain Type IDs as constants of the Model\n",
+ " model.HABITAT = \"Habitat\"\n",
+ "\n",
+ " \"\"\"\n",
+ " A domain defines points and attributes of a regional space for simulation.\n",
+ "\n",
+ " Create a filled 2D domain\n",
+ " - xlim: highest and lowest coordinate in the x dimension.\n",
+ " - ylim: highest and lowest coordinate in the y dimension.\n",
+ " - numx: number of particle spacing in the x dimension.\n",
+ " - numy: number of particle spacing in the y dimension.\n",
+ " - type_id: default type ID of particles to be created. Defaults to 1.\n",
+ " - mass: default mass of particles to be created. Defaults to 1.0.\n",
+ " - nu: default viscosity of particles to be created. Defaults to 1.0.\n",
+ " - c: default artificial speed of sound of particles to be created. Defaults to 0.0.\n",
+ " - rho: default density of particles to be created.\n",
+ " - fixed: spatially fixed flag of particles to be created. Defaults to false.\n",
+ " - rho0: Background density for the system.\n",
+ " - c0: Speed of sound for the system.\n",
+ " - P0: Background pressure for the system.\n",
+ " - gravity: Acceleration of gravity for the system.\n",
+ " - apply_action: If true, apply the action, else, add the action to Domain.actions.\n",
+ " \"\"\"\n",
+ " domain = spatialpy.Domain.create_2D_domain(\n",
+ " xlim=(0, 1), ylim=(0, 1), numx=10, numy=10, type_id=model.HABITAT, fixed=True\n",
+ " )\n",
+ "\n",
+ " # Set the Models Domain\n",
+ " model.add_domain(domain)\n",
+ "\n",
+ " \"\"\"\n",
+ " Variables (SpatialPy.Species) can be anything that participates in or is produced by a reaction channel.\n",
+ "\n",
+ " - name: A user defined name for the species.\n",
+ " - diffusion_coefficient: Non-constant coefficient of diffusion for the Species.\n",
+ " - restrict_to: Restricts the movement of Species to a type or list of types within the Domain.\n",
+ " \"\"\"\n",
+ " Rabbits = spatialpy.Species(name='Rabbits', diffusion_coefficient=0.1)\n",
+ "\n",
+ " # Add the Variables to the Model.\n",
+ " model.add_species(Rabbits)\n",
+ "\n",
+ " \"\"\"\n",
+ " Scatter the initial condition for a species randomly over the list of types.\n",
+ " If the list of types is None scatter over all types.\n",
+ "\n",
+ " - species: The species to set the initial condition.\n",
+ " - count: The initial condition for the target species.\n",
+ " - types: Type IDs of the particles to place the initial condition.\n",
+ " \"\"\"\n",
+ " init_rabbit_pop = spatialpy.ScatterInitialCondition(species='Rabbits', count=100)\n",
+ "\n",
+ " # Add Initial Conditions to the Model\n",
+ " model.add_initial_condition(init_rabbit_pop)\n",
+ "\n",
+ " \"\"\"\n",
+ " Parameters are constant values relevant to the system, such as reaction kinetic rates.\n",
+ "\n",
+ " - name: A user defined name for reference.\n",
+ " - expression: Some constant value.\n",
+ " \"\"\"\n",
+ " kb = spatialpy.Parameter(name='k_birth', expression=10)\n",
+ " kd = spatialpy.Parameter(name='k_death', expression=0.1)\n",
+ "\n",
+ " # Add the Parameters to the Model.\n",
+ " model.add_parameter([kb, kd])\n",
+ "\n",
+ " \"\"\"\n",
+ " Reactions are the reaction channels which cause the system to change over time.\n",
+ "\n",
+ " - name: A user defined name for the reaction.\n",
+ " - reactants: A dictionary with participant reactants as keys, and consumed per reaction as value.\n",
+ " - products: A dictionary with reaction products as keys, and number formed per reaction as value.\n",
+ " - rate: A parameter rate constant to be applied to the propensity of this reaction firing.\n",
+ " - propensity_function: Can be used instead of rate in order to declare a custom propensity function\n",
+ " in string format.\n",
+ " - restrict_to: Restrict reaction channels to a type or list of types within the Domain.\n",
+ " \"\"\"\n",
+ " birth = spatialpy.Reaction(\n",
+ " name='birth',\n",
+ " reactants={},\n",
+ " products={\"Rabbits\":1},\n",
+ " rate=\"k_birth\"\n",
+ " )\n",
+ "\n",
+ " death = spatialpy.Reaction(\n",
+ " name='death',\n",
+ " reactants={\"Rabbits\":1},\n",
+ " products={},\n",
+ " rate=\"k_death\"\n",
+ " )\n",
+ "\n",
+ " # Add the Reactions to the Model.\n",
+ " model.add_reaction([birth, death])\n",
+ "\n",
+ " # Define the Timespan of the Model\n",
+ " tspan = spatialpy.TimeSpan.linspace(t=10, num_points=11, timestep_size=1)\n",
+ " \n",
+ " # Set the Timespan of the Model\n",
+ " model.timespan(tspan)\n",
+ " return model"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Instantiate the Model"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "model = create_birth_death()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "***\n",
+ "## Running the Simulation\n",
+ "***\n",
+ "Run a spatial stochastic simulation on the Model and store the results in the 'results' variable."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "results = model.run()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### You can find a thorough list of `model.run()` arguments in the [documentation](https://stochss.github.io/SpatialPy/docs/build/html/classes/spatialpy.core.html#spatialpy.core.model.Model.run) to customize the behavior of your simulations.\"\n",
+ "***\n",
+ "## Visualizations\n",
+ "***\n",
+ "Plot the results of the simulation.\n",
+ "\n",
+ "There are a multitude of arguments that can be set to tweak the behavior and visuals of the plot. \n",
+ "For now though, lets plot the populations of `Rabbits` at the end of the simulation using MatPlotLib."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "image/png": "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\n",
+ "text/plain": [
+ ""
+ ]
+ },
+ "metadata": {
+ "needs_background": "light"
+ },
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "results.plot_species(\n",
+ " # Set the target species to visualize\n",
+ " species='Rabbits',\n",
+ " \n",
+ " # Set the time value to visualize (t_val defaults the 0)\n",
+ " t_val=10,\n",
+ " \n",
+ " # Set to True to use MatPlotLib plotting\n",
+ " use_matplotlib=True\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "That plot is somewhat boring though, so lets plot the populations of `Rabbits` over time using Plotly anumation."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "metadata": {
+ "scrolled": false
+ },
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ " \n",
+ " "
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/vnd.plotly.v1+json": {
+ "config": {
+ "linkText": "Export to plot.ly",
+ "plotlyServerURL": "https://plot.ly",
+ "showLink": false
+ },
+ "data": [
+ {
+ "marker": {
+ "color": [
+ 0,
+ 0,
+ 1,
+ 0,
+ 1,
+ 0,
+ 0,
+ 0,
+ 3,
+ 2,
+ 1,
+ 0,
+ 2,
+ 2,
+ 0,
+ 1,
+ 3,
+ 0,
+ 0,
+ 0,
+ 3,
+ 0,
+ 2,
+ 1,
+ 0,
+ 1,
+ 1,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 0,
+ 0,
+ 1,
+ 1,
+ 0,
+ 2,
+ 0,
+ 0,
+ 2,
+ 0,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 2,
+ 2,
+ 2,
+ 0,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 1,
+ 2,
+ 1,
+ 0,
+ 0,
+ 1,
+ 2,
+ 4,
+ 0,
+ 1,
+ 0,
+ 1,
+ 2,
+ 1,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 0,
+ 1,
+ 0,
+ 3,
+ 3,
+ 0,
+ 0,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 1,
+ 4,
+ 0,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 0,
+ 1,
+ 2,
+ 2,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 4,
+ 1,
+ 0,
+ 2
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "frames": [
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 0,
+ 0,
+ 1,
+ 0,
+ 1,
+ 0,
+ 0,
+ 0,
+ 3,
+ 2,
+ 1,
+ 0,
+ 2,
+ 2,
+ 0,
+ 1,
+ 3,
+ 0,
+ 0,
+ 0,
+ 3,
+ 0,
+ 2,
+ 1,
+ 0,
+ 1,
+ 1,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 0,
+ 0,
+ 1,
+ 1,
+ 0,
+ 2,
+ 0,
+ 0,
+ 2,
+ 0,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 2,
+ 2,
+ 2,
+ 0,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 1,
+ 2,
+ 1,
+ 0,
+ 0,
+ 1,
+ 2,
+ 4,
+ 0,
+ 1,
+ 0,
+ 1,
+ 2,
+ 1,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 0,
+ 1,
+ 0,
+ 3,
+ 3,
+ 0,
+ 0,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 1,
+ 4,
+ 0,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 0,
+ 1,
+ 2,
+ 2,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 4,
+ 1,
+ 0,
+ 2
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "0.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 0,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 2,
+ 1,
+ 3,
+ 1,
+ 1,
+ 1,
+ 0,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 2,
+ 0,
+ 0,
+ 3,
+ 1,
+ 1,
+ 1,
+ 3,
+ 2,
+ 1,
+ 0,
+ 2,
+ 2,
+ 2,
+ 0,
+ 1,
+ 2,
+ 0,
+ 0,
+ 1,
+ 0,
+ 0,
+ 1,
+ 0,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 0,
+ 0,
+ 2,
+ 1,
+ 1,
+ 1,
+ 1,
+ 2,
+ 0,
+ 1,
+ 0,
+ 1,
+ 2,
+ 1,
+ 0,
+ 2,
+ 1,
+ 1,
+ 1,
+ 3,
+ 0,
+ 0,
+ 1,
+ 2,
+ 0,
+ 2,
+ 1,
+ 1,
+ 0,
+ 1,
+ 0,
+ 2,
+ 1,
+ 0,
+ 0,
+ 0,
+ 2,
+ 0,
+ 2,
+ 1,
+ 2,
+ 1,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 1,
+ 1,
+ 2,
+ 1,
+ 1,
+ 2,
+ 0,
+ 2,
+ 1,
+ 2,
+ 2,
+ 0,
+ 1,
+ 2,
+ 2,
+ 1,
+ 0,
+ 0,
+ 5,
+ 1,
+ 1,
+ 1,
+ 2,
+ 2,
+ 2
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "1.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 1,
+ 2,
+ 0,
+ 2,
+ 1,
+ 2,
+ 0,
+ 2,
+ 0,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 2,
+ 0,
+ 1,
+ 0,
+ 1,
+ 0,
+ 1,
+ 2,
+ 1,
+ 1,
+ 1,
+ 1,
+ 0,
+ 1,
+ 1,
+ 1,
+ 2,
+ 2,
+ 0,
+ 0,
+ 0,
+ 2,
+ 2,
+ 1,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 2,
+ 0,
+ 3,
+ 1,
+ 1,
+ 0,
+ 2,
+ 3,
+ 0,
+ 0,
+ 3,
+ 0,
+ 2,
+ 3,
+ 1,
+ 2,
+ 0,
+ 4,
+ 3,
+ 3,
+ 2,
+ 2,
+ 1,
+ 2,
+ 0,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 1,
+ 0,
+ 0,
+ 2,
+ 3,
+ 0,
+ 2,
+ 2,
+ 3,
+ 5,
+ 1,
+ 1,
+ 2,
+ 1,
+ 1,
+ 0,
+ 0,
+ 1,
+ 4,
+ 1,
+ 2,
+ 2,
+ 0,
+ 1,
+ 1,
+ 1,
+ 0,
+ 1,
+ 1,
+ 0,
+ 2,
+ 1,
+ 3,
+ 4,
+ 0,
+ 4,
+ 1,
+ 1,
+ 0,
+ 0,
+ 2,
+ 0,
+ 2,
+ 3,
+ 2,
+ 1,
+ 3,
+ 3
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "2.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 1,
+ 3,
+ 2,
+ 0,
+ 3,
+ 0,
+ 1,
+ 3,
+ 7,
+ 0,
+ 0,
+ 2,
+ 1,
+ 1,
+ 1,
+ 0,
+ 1,
+ 1,
+ 1,
+ 4,
+ 0,
+ 3,
+ 0,
+ 3,
+ 0,
+ 1,
+ 5,
+ 1,
+ 3,
+ 2,
+ 2,
+ 0,
+ 3,
+ 0,
+ 3,
+ 0,
+ 0,
+ 3,
+ 0,
+ 1,
+ 2,
+ 2,
+ 2,
+ 2,
+ 0,
+ 1,
+ 3,
+ 1,
+ 1,
+ 3,
+ 3,
+ 0,
+ 1,
+ 2,
+ 0,
+ 1,
+ 2,
+ 4,
+ 4,
+ 1,
+ 1,
+ 1,
+ 2,
+ 1,
+ 2,
+ 1,
+ 2,
+ 4,
+ 2,
+ 0,
+ 0,
+ 4,
+ 2,
+ 2,
+ 1,
+ 0,
+ 1,
+ 2,
+ 1,
+ 2,
+ 0,
+ 1,
+ 1,
+ 2,
+ 2,
+ 0,
+ 0,
+ 0,
+ 2,
+ 0,
+ 0,
+ 0,
+ 1,
+ 0,
+ 2,
+ 2,
+ 3,
+ 2,
+ 0,
+ 3,
+ 1,
+ 2,
+ 2,
+ 4,
+ 2,
+ 0,
+ 2,
+ 0,
+ 1,
+ 2,
+ 1,
+ 0,
+ 3,
+ 5,
+ 0,
+ 0,
+ 1,
+ 0,
+ 1,
+ 2,
+ 2
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "3.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 4,
+ 1,
+ 0,
+ 0,
+ 1,
+ 0,
+ 2,
+ 1,
+ 2,
+ 4,
+ 1,
+ 1,
+ 1,
+ 1,
+ 0,
+ 3,
+ 2,
+ 1,
+ 0,
+ 3,
+ 2,
+ 4,
+ 2,
+ 1,
+ 5,
+ 1,
+ 0,
+ 3,
+ 1,
+ 3,
+ 4,
+ 3,
+ 3,
+ 2,
+ 4,
+ 2,
+ 2,
+ 0,
+ 2,
+ 0,
+ 3,
+ 1,
+ 2,
+ 1,
+ 4,
+ 2,
+ 4,
+ 4,
+ 0,
+ 1,
+ 2,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 0,
+ 5,
+ 4,
+ 4,
+ 1,
+ 0,
+ 2,
+ 1,
+ 3,
+ 2,
+ 4,
+ 3,
+ 1,
+ 3,
+ 3,
+ 3,
+ 1,
+ 3,
+ 0,
+ 4,
+ 2,
+ 1,
+ 3,
+ 0,
+ 1,
+ 2,
+ 1,
+ 2,
+ 3,
+ 0,
+ 0,
+ 1,
+ 4,
+ 4,
+ 1,
+ 2,
+ 0,
+ 1,
+ 2,
+ 4,
+ 3,
+ 1,
+ 1,
+ 0,
+ 1,
+ 2,
+ 1,
+ 2,
+ 0,
+ 1,
+ 1,
+ 2,
+ 2,
+ 0,
+ 1,
+ 2,
+ 1,
+ 1,
+ 1,
+ 1,
+ 2,
+ 2,
+ 4,
+ 2,
+ 0
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "4.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 2,
+ 0,
+ 2,
+ 2,
+ 0,
+ 3,
+ 2,
+ 4,
+ 3,
+ 2,
+ 1,
+ 0,
+ 0,
+ 3,
+ 2,
+ 2,
+ 1,
+ 1,
+ 3,
+ 1,
+ 4,
+ 0,
+ 3,
+ 2,
+ 4,
+ 0,
+ 3,
+ 4,
+ 1,
+ 4,
+ 1,
+ 3,
+ 4,
+ 1,
+ 4,
+ 1,
+ 4,
+ 1,
+ 2,
+ 3,
+ 5,
+ 1,
+ 2,
+ 2,
+ 3,
+ 2,
+ 1,
+ 2,
+ 5,
+ 2,
+ 1,
+ 2,
+ 5,
+ 3,
+ 0,
+ 0,
+ 5,
+ 3,
+ 0,
+ 1,
+ 1,
+ 1,
+ 2,
+ 1,
+ 5,
+ 4,
+ 1,
+ 5,
+ 2,
+ 1,
+ 2,
+ 1,
+ 3,
+ 1,
+ 2,
+ 0,
+ 2,
+ 2,
+ 4,
+ 2,
+ 1,
+ 1,
+ 4,
+ 3,
+ 1,
+ 1,
+ 3,
+ 4,
+ 1,
+ 0,
+ 2,
+ 1,
+ 3,
+ 3,
+ 1,
+ 0,
+ 2,
+ 0,
+ 2,
+ 2,
+ 4,
+ 2,
+ 4,
+ 2,
+ 1,
+ 1,
+ 1,
+ 1,
+ 2,
+ 1,
+ 0,
+ 5,
+ 1,
+ 1,
+ 2,
+ 4,
+ 0,
+ 1,
+ 6,
+ 2,
+ 3
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "5.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 2,
+ 3,
+ 0,
+ 1,
+ 5,
+ 2,
+ 4,
+ 3,
+ 2,
+ 3,
+ 3,
+ 7,
+ 1,
+ 7,
+ 3,
+ 4,
+ 4,
+ 6,
+ 1,
+ 0,
+ 3,
+ 4,
+ 3,
+ 5,
+ 2,
+ 4,
+ 1,
+ 3,
+ 0,
+ 5,
+ 2,
+ 2,
+ 3,
+ 1,
+ 3,
+ 3,
+ 3,
+ 4,
+ 3,
+ 1,
+ 3,
+ 1,
+ 1,
+ 1,
+ 3,
+ 0,
+ 2,
+ 4,
+ 4,
+ 0,
+ 0,
+ 2,
+ 2,
+ 1,
+ 2,
+ 0,
+ 4,
+ 3,
+ 2,
+ 4,
+ 3,
+ 1,
+ 0,
+ 8,
+ 5,
+ 1,
+ 2,
+ 4,
+ 2,
+ 2,
+ 2,
+ 2,
+ 2,
+ 2,
+ 5,
+ 2,
+ 1,
+ 7,
+ 7,
+ 2,
+ 4,
+ 0,
+ 4,
+ 1,
+ 3,
+ 3,
+ 1,
+ 1,
+ 0,
+ 3,
+ 4,
+ 0,
+ 4,
+ 2,
+ 0,
+ 2,
+ 1,
+ 2,
+ 2,
+ 1,
+ 2,
+ 3,
+ 3,
+ 1,
+ 2,
+ 3,
+ 2,
+ 3,
+ 1,
+ 1,
+ 3,
+ 1,
+ 4,
+ 2,
+ 1,
+ 1,
+ 0,
+ 1,
+ 3,
+ 0,
+ 2
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "6.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 1,
+ 5,
+ 1,
+ 4,
+ 3,
+ 7,
+ 3,
+ 2,
+ 3,
+ 1,
+ 3,
+ 3,
+ 4,
+ 5,
+ 2,
+ 1,
+ 4,
+ 3,
+ 3,
+ 5,
+ 4,
+ 2,
+ 5,
+ 0,
+ 3,
+ 5,
+ 4,
+ 2,
+ 4,
+ 5,
+ 4,
+ 4,
+ 1,
+ 4,
+ 2,
+ 3,
+ 3,
+ 4,
+ 3,
+ 4,
+ 2,
+ 2,
+ 0,
+ 2,
+ 1,
+ 3,
+ 5,
+ 3,
+ 2,
+ 1,
+ 3,
+ 2,
+ 1,
+ 1,
+ 2,
+ 2,
+ 5,
+ 1,
+ 3,
+ 2,
+ 3,
+ 6,
+ 2,
+ 3,
+ 2,
+ 0,
+ 1,
+ 4,
+ 2,
+ 4,
+ 4,
+ 2,
+ 1,
+ 3,
+ 3,
+ 3,
+ 5,
+ 2,
+ 3,
+ 7,
+ 4,
+ 3,
+ 1,
+ 1,
+ 3,
+ 1,
+ 0,
+ 3,
+ 0,
+ 2,
+ 2,
+ 3,
+ 1,
+ 5,
+ 3,
+ 4,
+ 3,
+ 2,
+ 3,
+ 4,
+ 5,
+ 3,
+ 3,
+ 4,
+ 1,
+ 4,
+ 1,
+ 2,
+ 2,
+ 4,
+ 2,
+ 2,
+ 2,
+ 1,
+ 2,
+ 3,
+ 2,
+ 1,
+ 2,
+ 2,
+ 2
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "7.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 2,
+ 5,
+ 5,
+ 4,
+ 2,
+ 4,
+ 7,
+ 2,
+ 0,
+ 2,
+ 7,
+ 5,
+ 3,
+ 5,
+ 4,
+ 2,
+ 3,
+ 0,
+ 2,
+ 3,
+ 1,
+ 1,
+ 8,
+ 2,
+ 2,
+ 2,
+ 1,
+ 2,
+ 3,
+ 2,
+ 3,
+ 5,
+ 3,
+ 5,
+ 2,
+ 1,
+ 0,
+ 3,
+ 5,
+ 1,
+ 7,
+ 5,
+ 0,
+ 6,
+ 4,
+ 3,
+ 4,
+ 0,
+ 2,
+ 4,
+ 3,
+ 1,
+ 3,
+ 3,
+ 3,
+ 2,
+ 4,
+ 2,
+ 3,
+ 4,
+ 3,
+ 0,
+ 5,
+ 2,
+ 1,
+ 1,
+ 3,
+ 4,
+ 1,
+ 2,
+ 4,
+ 3,
+ 3,
+ 4,
+ 2,
+ 2,
+ 2,
+ 1,
+ 1,
+ 2,
+ 3,
+ 3,
+ 6,
+ 4,
+ 4,
+ 6,
+ 5,
+ 1,
+ 6,
+ 2,
+ 3,
+ 4,
+ 3,
+ 2,
+ 4,
+ 8,
+ 3,
+ 5,
+ 1,
+ 3,
+ 3,
+ 3,
+ 1,
+ 6,
+ 2,
+ 5,
+ 3,
+ 3,
+ 5,
+ 8,
+ 1,
+ 5,
+ 3,
+ 2,
+ 3,
+ 7,
+ 4,
+ 4,
+ 2,
+ 1,
+ 6
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "8.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 1,
+ 3,
+ 4,
+ 5,
+ 3,
+ 4,
+ 7,
+ 5,
+ 2,
+ 4,
+ 1,
+ 5,
+ 6,
+ 4,
+ 6,
+ 3,
+ 3,
+ 1,
+ 2,
+ 0,
+ 5,
+ 5,
+ 1,
+ 1,
+ 2,
+ 3,
+ 5,
+ 4,
+ 7,
+ 3,
+ 1,
+ 6,
+ 5,
+ 5,
+ 5,
+ 6,
+ 3,
+ 4,
+ 3,
+ 4,
+ 1,
+ 3,
+ 1,
+ 2,
+ 1,
+ 2,
+ 2,
+ 6,
+ 4,
+ 3,
+ 3,
+ 3,
+ 2,
+ 1,
+ 4,
+ 8,
+ 2,
+ 5,
+ 1,
+ 6,
+ 1,
+ 4,
+ 4,
+ 4,
+ 6,
+ 5,
+ 5,
+ 4,
+ 7,
+ 5,
+ 1,
+ 6,
+ 1,
+ 4,
+ 2,
+ 2,
+ 2,
+ 1,
+ 7,
+ 3,
+ 6,
+ 4,
+ 4,
+ 4,
+ 4,
+ 5,
+ 1,
+ 5,
+ 4,
+ 3,
+ 4,
+ 3,
+ 1,
+ 4,
+ 4,
+ 5,
+ 4,
+ 5,
+ 1,
+ 1,
+ 1,
+ 3,
+ 2,
+ 6,
+ 1,
+ 3,
+ 3,
+ 2,
+ 14,
+ 4,
+ 3,
+ 2,
+ 5,
+ 3,
+ 3,
+ 3,
+ 2,
+ 4,
+ 6,
+ 4,
+ 3
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "9.0"
+ },
+ {
+ "data": [
+ {
+ "marker": {
+ "cmax": 4.1,
+ "cmin": -0.1,
+ "color": [
+ 2,
+ 7,
+ 1,
+ 2,
+ 3,
+ 7,
+ 1,
+ 3,
+ 9,
+ 2,
+ 6,
+ 6,
+ 6,
+ 4,
+ 4,
+ 7,
+ 5,
+ 4,
+ 2,
+ 5,
+ 2,
+ 10,
+ 5,
+ 7,
+ 2,
+ 4,
+ 3,
+ 8,
+ 4,
+ 10,
+ 6,
+ 4,
+ 4,
+ 5,
+ 4,
+ 4,
+ 4,
+ 4,
+ 4,
+ 4,
+ 7,
+ 6,
+ 3,
+ 2,
+ 2,
+ 4,
+ 3,
+ 4,
+ 5,
+ 4,
+ 3,
+ 4,
+ 1,
+ 3,
+ 3,
+ 6,
+ 6,
+ 4,
+ 2,
+ 2,
+ 3,
+ 5,
+ 3,
+ 1,
+ 10,
+ 6,
+ 1,
+ 3,
+ 5,
+ 1,
+ 1,
+ 1,
+ 3,
+ 5,
+ 4,
+ 1,
+ 6,
+ 4,
+ 4,
+ 4,
+ 6,
+ 3,
+ 3,
+ 4,
+ 3,
+ 6,
+ 5,
+ 2,
+ 1,
+ 5,
+ 2,
+ 2,
+ 5,
+ 4,
+ 4,
+ 8,
+ 1,
+ 4,
+ 3,
+ 5,
+ 1,
+ 3,
+ 2,
+ 3,
+ 4,
+ 4,
+ 4,
+ 5,
+ 0,
+ 1,
+ 4,
+ 8,
+ 3,
+ 2,
+ 8,
+ 4,
+ 6,
+ 7,
+ 2,
+ 1,
+ 6
+ ],
+ "colorbar": {
+ "thickness": 20,
+ "title": {
+ "text": "Rabbits"
+ }
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0508b8"
+ ],
+ [
+ 0.08333333333333333,
+ "#1910d8"
+ ],
+ [
+ 0.16666666666666666,
+ "#3c19f0"
+ ],
+ [
+ 0.25,
+ "#6b1cfb"
+ ],
+ [
+ 0.3333333333333333,
+ "#981cfd"
+ ],
+ [
+ 0.4166666666666667,
+ "#bf1cfd"
+ ],
+ [
+ 0.5,
+ "#dd2bfd"
+ ],
+ [
+ 0.5833333333333334,
+ "#f246fe"
+ ],
+ [
+ 0.6666666666666666,
+ "#fc67fd"
+ ],
+ [
+ 0.75,
+ "#fe88fc"
+ ],
+ [
+ 0.8333333333333334,
+ "#fea5fd"
+ ],
+ [
+ 0.9166666666666666,
+ "#febefe"
+ ],
+ [
+ 1,
+ "#fec3fe"
+ ]
+ ],
+ "size": 20
+ },
+ "mode": "markers",
+ "name": "Rabbits",
+ "type": "scatter",
+ "x": [
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 0.8888888955116272,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176,
+ 1.1111111640930176
+ ],
+ "y": [
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176,
+ 0,
+ 0.1111111119389534,
+ 0.2222222238779068,
+ 0.3333333432674408,
+ 0.4444444477558136,
+ 0.5555555820465088,
+ 0.6666666865348816,
+ 0.7777777910232544,
+ 0.8888888955116272,
+ 1,
+ 1.1111111640930176
+ ]
+ }
+ ],
+ "name": "10.0"
+ }
+ ],
+ "layout": {
+ "height": 500,
+ "scene": {
+ "aspectmode": "data"
+ },
+ "sliders": [
+ {
+ "active": 0,
+ "currentvalue": {
+ "font": {
+ "size": 20
+ },
+ "prefix": "Time:",
+ "visible": true,
+ "xanchor": "right"
+ },
+ "len": 0.9,
+ "pad": {
+ "b": 10,
+ "t": 50
+ },
+ "steps": [
+ {
+ "args": [
+ [
+ "0.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "0.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "1.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "1.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "2.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "2.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "3.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "3.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "4.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "4.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "5.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "5.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "6.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "6.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "7.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "7.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "8.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "8.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "9.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "9.0",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ "10.0"
+ ],
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": true
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 300
+ }
+ }
+ ],
+ "label": "10.0",
+ "method": "animate"
+ }
+ ],
+ "transition": {
+ "duration": 300,
+ "easing": "cubic-in-out"
+ },
+ "x": 0.1,
+ "xanchor": "left",
+ "y": 0,
+ "yanchor": "top"
+ }
+ ],
+ "template": {
+ "data": {
+ "bar": [
+ {
+ "error_x": {
+ "color": "#2a3f5f"
+ },
+ "error_y": {
+ "color": "#2a3f5f"
+ },
+ "marker": {
+ "line": {
+ "color": "#E5ECF6",
+ "width": 0.5
+ },
+ "pattern": {
+ "fillmode": "overlay",
+ "size": 10,
+ "solidity": 0.2
+ }
+ },
+ "type": "bar"
+ }
+ ],
+ "barpolar": [
+ {
+ "marker": {
+ "line": {
+ "color": "#E5ECF6",
+ "width": 0.5
+ },
+ "pattern": {
+ "fillmode": "overlay",
+ "size": 10,
+ "solidity": 0.2
+ }
+ },
+ "type": "barpolar"
+ }
+ ],
+ "carpet": [
+ {
+ "aaxis": {
+ "endlinecolor": "#2a3f5f",
+ "gridcolor": "white",
+ "linecolor": "white",
+ "minorgridcolor": "white",
+ "startlinecolor": "#2a3f5f"
+ },
+ "baxis": {
+ "endlinecolor": "#2a3f5f",
+ "gridcolor": "white",
+ "linecolor": "white",
+ "minorgridcolor": "white",
+ "startlinecolor": "#2a3f5f"
+ },
+ "type": "carpet"
+ }
+ ],
+ "choropleth": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "type": "choropleth"
+ }
+ ],
+ "contour": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ],
+ "type": "contour"
+ }
+ ],
+ "contourcarpet": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "type": "contourcarpet"
+ }
+ ],
+ "heatmap": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ],
+ "type": "heatmap"
+ }
+ ],
+ "heatmapgl": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ],
+ "type": "heatmapgl"
+ }
+ ],
+ "histogram": [
+ {
+ "marker": {
+ "pattern": {
+ "fillmode": "overlay",
+ "size": 10,
+ "solidity": 0.2
+ }
+ },
+ "type": "histogram"
+ }
+ ],
+ "histogram2d": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ],
+ "type": "histogram2d"
+ }
+ ],
+ "histogram2dcontour": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ],
+ "type": "histogram2dcontour"
+ }
+ ],
+ "mesh3d": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "type": "mesh3d"
+ }
+ ],
+ "parcoords": [
+ {
+ "line": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "parcoords"
+ }
+ ],
+ "pie": [
+ {
+ "automargin": true,
+ "type": "pie"
+ }
+ ],
+ "scatter": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scatter"
+ }
+ ],
+ "scatter3d": [
+ {
+ "line": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scatter3d"
+ }
+ ],
+ "scattercarpet": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scattercarpet"
+ }
+ ],
+ "scattergeo": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scattergeo"
+ }
+ ],
+ "scattergl": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scattergl"
+ }
+ ],
+ "scattermapbox": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scattermapbox"
+ }
+ ],
+ "scatterpolar": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scatterpolar"
+ }
+ ],
+ "scatterpolargl": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scatterpolargl"
+ }
+ ],
+ "scatterternary": [
+ {
+ "marker": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "type": "scatterternary"
+ }
+ ],
+ "surface": [
+ {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ },
+ "colorscale": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ],
+ "type": "surface"
+ }
+ ],
+ "table": [
+ {
+ "cells": {
+ "fill": {
+ "color": "#EBF0F8"
+ },
+ "line": {
+ "color": "white"
+ }
+ },
+ "header": {
+ "fill": {
+ "color": "#C8D4E3"
+ },
+ "line": {
+ "color": "white"
+ }
+ },
+ "type": "table"
+ }
+ ]
+ },
+ "layout": {
+ "annotationdefaults": {
+ "arrowcolor": "#2a3f5f",
+ "arrowhead": 0,
+ "arrowwidth": 1
+ },
+ "autotypenumbers": "strict",
+ "coloraxis": {
+ "colorbar": {
+ "outlinewidth": 0,
+ "ticks": ""
+ }
+ },
+ "colorscale": {
+ "diverging": [
+ [
+ 0,
+ "#8e0152"
+ ],
+ [
+ 0.1,
+ "#c51b7d"
+ ],
+ [
+ 0.2,
+ "#de77ae"
+ ],
+ [
+ 0.3,
+ "#f1b6da"
+ ],
+ [
+ 0.4,
+ "#fde0ef"
+ ],
+ [
+ 0.5,
+ "#f7f7f7"
+ ],
+ [
+ 0.6,
+ "#e6f5d0"
+ ],
+ [
+ 0.7,
+ "#b8e186"
+ ],
+ [
+ 0.8,
+ "#7fbc41"
+ ],
+ [
+ 0.9,
+ "#4d9221"
+ ],
+ [
+ 1,
+ "#276419"
+ ]
+ ],
+ "sequential": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ],
+ "sequentialminus": [
+ [
+ 0,
+ "#0d0887"
+ ],
+ [
+ 0.1111111111111111,
+ "#46039f"
+ ],
+ [
+ 0.2222222222222222,
+ "#7201a8"
+ ],
+ [
+ 0.3333333333333333,
+ "#9c179e"
+ ],
+ [
+ 0.4444444444444444,
+ "#bd3786"
+ ],
+ [
+ 0.5555555555555556,
+ "#d8576b"
+ ],
+ [
+ 0.6666666666666666,
+ "#ed7953"
+ ],
+ [
+ 0.7777777777777778,
+ "#fb9f3a"
+ ],
+ [
+ 0.8888888888888888,
+ "#fdca26"
+ ],
+ [
+ 1,
+ "#f0f921"
+ ]
+ ]
+ },
+ "colorway": [
+ "#636efa",
+ "#EF553B",
+ "#00cc96",
+ "#ab63fa",
+ "#FFA15A",
+ "#19d3f3",
+ "#FF6692",
+ "#B6E880",
+ "#FF97FF",
+ "#FECB52"
+ ],
+ "font": {
+ "color": "#2a3f5f"
+ },
+ "geo": {
+ "bgcolor": "white",
+ "lakecolor": "white",
+ "landcolor": "#E5ECF6",
+ "showlakes": true,
+ "showland": true,
+ "subunitcolor": "white"
+ },
+ "hoverlabel": {
+ "align": "left"
+ },
+ "hovermode": "closest",
+ "mapbox": {
+ "style": "light"
+ },
+ "paper_bgcolor": "white",
+ "plot_bgcolor": "#E5ECF6",
+ "polar": {
+ "angularaxis": {
+ "gridcolor": "white",
+ "linecolor": "white",
+ "ticks": ""
+ },
+ "bgcolor": "#E5ECF6",
+ "radialaxis": {
+ "gridcolor": "white",
+ "linecolor": "white",
+ "ticks": ""
+ }
+ },
+ "scene": {
+ "xaxis": {
+ "backgroundcolor": "#E5ECF6",
+ "gridcolor": "white",
+ "gridwidth": 2,
+ "linecolor": "white",
+ "showbackground": true,
+ "ticks": "",
+ "zerolinecolor": "white"
+ },
+ "yaxis": {
+ "backgroundcolor": "#E5ECF6",
+ "gridcolor": "white",
+ "gridwidth": 2,
+ "linecolor": "white",
+ "showbackground": true,
+ "ticks": "",
+ "zerolinecolor": "white"
+ },
+ "zaxis": {
+ "backgroundcolor": "#E5ECF6",
+ "gridcolor": "white",
+ "gridwidth": 2,
+ "linecolor": "white",
+ "showbackground": true,
+ "ticks": "",
+ "zerolinecolor": "white"
+ }
+ },
+ "shapedefaults": {
+ "line": {
+ "color": "#2a3f5f"
+ }
+ },
+ "ternary": {
+ "aaxis": {
+ "gridcolor": "white",
+ "linecolor": "white",
+ "ticks": ""
+ },
+ "baxis": {
+ "gridcolor": "white",
+ "linecolor": "white",
+ "ticks": ""
+ },
+ "bgcolor": "#E5ECF6",
+ "caxis": {
+ "gridcolor": "white",
+ "linecolor": "white",
+ "ticks": ""
+ }
+ },
+ "title": {
+ "x": 0.05
+ },
+ "xaxis": {
+ "automargin": true,
+ "gridcolor": "white",
+ "linecolor": "white",
+ "ticks": "",
+ "title": {
+ "standoff": 15
+ },
+ "zerolinecolor": "white",
+ "zerolinewidth": 2
+ },
+ "yaxis": {
+ "automargin": true,
+ "gridcolor": "white",
+ "linecolor": "white",
+ "ticks": "",
+ "title": {
+ "standoff": 15
+ },
+ "zerolinecolor": "white",
+ "zerolinewidth": 2
+ }
+ }
+ },
+ "updatemenus": [
+ {
+ "buttons": [
+ {
+ "args": [
+ null,
+ {
+ "frame": {
+ "duration": 500,
+ "redraw": false
+ },
+ "fromcurrent": true,
+ "transition": {
+ "duration": 300,
+ "easing": "quadratic-in-out"
+ }
+ }
+ ],
+ "label": "Play",
+ "method": "animate"
+ },
+ {
+ "args": [
+ [
+ null
+ ],
+ {
+ "frame": {
+ "duration": 0,
+ "redraw": false
+ },
+ "mode": "immediate",
+ "transition": {
+ "duration": 0
+ }
+ }
+ ],
+ "label": "Pause",
+ "method": "animate"
+ }
+ ],
+ "direction": "left",
+ "pad": {
+ "r": 10,
+ "t": 87
+ },
+ "showactive": false,
+ "type": "buttons",
+ "x": 0.1,
+ "xanchor": "right",
+ "y": 0,
+ "yanchor": "top"
+ }
+ ],
+ "width": 500,
+ "xaxis": {
+ "range": [
+ 0,
+ 1.1111111111111112
+ ]
+ },
+ "yaxis": {
+ "range": [
+ 0,
+ 1.1111111111111112
+ ]
+ }
+ }
+ },
+ "text/html": [
+ ""
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "results.plot_species(\n",
+ " # Set the target species to visualize\n",
+ " species='Rabbits',\n",
+ " \n",
+ " # Set to True to use Plotly animation\n",
+ " animated=True,\n",
+ " \n",
+ " # Set the size of the Particles\n",
+ " size=20\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### A more complete list of `results.plot_species()` arguments can be found in the [documentation](https://stochss.github.io/SpatialPy/docs/build/html/classes/spatialpy.core.html#spatialpy.core.result.Result.plot_species).\n",
+ "***\n",
+ "## Where to go now?\n",
+ "***\n",
+ "For a more advanced example on reaction diffusion follow the link below:\n",
+ "\n",
+ "- [3D Cylinder Demo](./3D_Cylinder_Demo.ipynb)\n",
+ "\n",
+ "For examples on Fluid Dynamic models follow the links below:\n",
+ "\n",
+ "- [Gravity](./Gravity.ipynb)\n",
+ "- [Weir](./weir.ipynb)"
+ ]
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.9.9"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}
diff --git a/spatialpy/core/timespan.py b/spatialpy/core/timespan.py
index d32ea1ee..f467bb86 100644
--- a/spatialpy/core/timespan.py
+++ b/spatialpy/core/timespan.py
@@ -25,10 +25,10 @@ class TimeSpan(Iterator):
the species populations during the simulation.
:param items: Evenly-spaced list of times at which to sample the species populations during the simulation.
- Best to use the form np.linspace(, , )
+ Best to use the form np.linspace(0, , )
:type items: list, tuple, range, or numpy.ndarray
- :param timestep_size: Size of each timestep in seconds
+ :param timestep_size: Size of each timestep
:type timestep_size: int | float
:raises TimespanError: items is an invalid type.