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Engreitz Lab

Engreitz Lab @ Stanford University

25 followers
Stanford, CA
http://www.engreitzlab.org

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ABC-GWAS-Paper ABC-GWAS-Paper Public

Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021

PostScript 15 2
CRISPRDesigner CRISPRDesigner Public

Design and selection of gRNAs for pooled CRISPRi tiling screens

Python 2

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Showing 10 of 26 repositories

scE2G Public
Pipeline to run scE2G

EngreitzLab/scE2G’s past year of commit activity

Python 27 MIT 3 2 0 Updated Jun 19, 2025
DC_TAP_Paper Public
Workflow for analyzing DC TAP datasets

EngreitzLab/DC_TAP_Paper’s past year of commit activity

R 0 1 0 0 Updated Jun 18, 2025
ENCODE_rE2G Public
Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model

EngreitzLab/ENCODE_rE2G’s past year of commit activity

Python 7 2 1 1 Updated Jun 9, 2025
ENCODE_Test_Dataset_Analysis Public

EngreitzLab/ENCODE_Test_Dataset_Analysis’s past year of commit activity

R 0 1 0 0 Updated Jun 3, 2025
CRISPR_comparison Public
Snakemake workflow for comparing E-G links to experimental data

EngreitzLab/CRISPR_comparison’s past year of commit activity

HTML 19 2 0 1 Updated May 30, 2025
eQTLEnrichment Public

EngreitzLab/eQTLEnrichment’s past year of commit activity

R 3 1 0 0 Updated Apr 18, 2025
cNMF_pipeline Public

EngreitzLab/cNMF_pipeline’s past year of commit activity

Jupyter Notebook 5 0 1 1 Updated Apr 15, 2025
ABC-Enhancer-Gene-Prediction-20250314-archive Public archive
Backup of https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction with full commit history. Please visit that repository for the most recent pipeline.

EngreitzLab/ABC-Enhancer-Gene-Prediction-20250314-archive’s past year of commit activity

Python 0 MIT 0 0 0 Updated Mar 15, 2025
IGVF_E2G_jamboree_2024 Public
Helper scripts for IGVF E2G pillar project jamboree 2024

EngreitzLab/IGVF_E2G_jamboree_2024’s past year of commit activity

R 0 2 0 0 Updated Mar 12, 2025
GWAS_E2G_benchmarking Public
Benchmark enhancer-gene predictions against fine-mapped GWAS variants

EngreitzLab/GWAS_E2G_benchmarking’s past year of commit activity

R 2 1 2 0 Updated Feb 15, 2025

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